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Series GSE12691 Query DataSets for GSE12691
Status Public on Sep 17, 2008
Title Knockdown and overexpression of CIN-TCP genes
Organism Arabidopsis thaliana
Experiment type Expression profiling by array
Summary Leaf development has been monitored chiefly by following anatomical markers. Analysis of transcriptome dynamics during leaf maturation revealed multiple expression patterns that rise or fall with age or that display age specific peaks. These were used to formulate a digital differentiation index (DDI), based on a set of selected markers with informative expression during leaf ontogeny. The leaf-based DDI reliably predicted the developmental state of leaf samples from diverse sources and was independent of mitotic cell division transcripts or propensity of the specific cell type. When calibrated by informative root markers, the same algorithm accurately diagnosed dissected root samples. We used the DDI to characterize plants with reduced activities of multiple CINCINNATA (CIN)-TCP growth regulators. These plants had giant curled leaves made up of small cells with abnormal shape, low DDI scores and low expression of mitosis markers, depicting the primary role of CIN-TCPs as promoters of differentiation. Delayed activity of several CIN-TCPs resulted in abnormally large but flat leaves with regular cells. The application of DDI has therefore portrayed the CIN-TCPs as heterochronic regulators that permit the development of a flexible and robust leaf form through an ordered and protracted maturation schedule.
Overall design Vegetative apices of arabidopsis plants from modified CIN-TCP activity were collected.
1. Overexpression of an artificial microRNA targeting TCP5, TCP13 and TCP17
2. Overexpression of the endogenous microRNA 319b targeting TCP2, TCP3, TCP4, TCP10 and TCP24
3. the combination of the two microRNA, knocking down the eight CIN-TCP
4. Overexpression of TCP4 under the leaf specific BLS promoter
Contributor(s) Eshed Y, Blum E, Efroni I
Citation(s) 18805992, 27710768
Submission date Sep 07, 2008
Last update date Aug 28, 2018
Contact name Idan D. Efroni
Organization name Weizmann Institute
Street address Weizmann
City Rehovot
ZIP/Postal code 76100
Country Israel
Platforms (1)
GPL198 [ATH1-121501] Affymetrix Arabidopsis ATH1 Genome Array
Samples (10)
GSM318618 Apex_Col_14DAS_1
GSM318619 Apex_Col_14DAS_2
GSM318620 Apex_mir-3TCP_14DAS_1
BioProject PRJNA112699

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12691_RAW.tar 23.5 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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