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GEO help: Mouse over screen elements for information. |
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| Status |
Public on Feb 08, 2019 |
| Title |
Single-cell combinatorial indexing ATAC-seq of HCC1143 with MEK, PI3K, and BET inhibition |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
We performed single-cell combinatorial indexing ATAC-seq on the basal-like TNBC cell line HCC1143 under MEK, PI3K, BET and combination treatments as well as DMSO controls
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| Overall design |
Cells were cultured and exposed to inhibitors or vehicle for 72 hours and processed in a single batch of sci-ATAC-seq using transposition barcodes for sample tracking to eliminate batch effects downstream
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| Contributor(s) |
Adey AC, Sears RC |
| Citation(s) |
30232459 |
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| Submission date |
Feb 07, 2019 |
| Last update date |
May 10, 2019 |
| Contact name |
Andrew Adey |
| E-mail(s) |
adey@ohsu.edu
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| Organization name |
Oregon Health & Science University
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| Department |
MMG
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| Lab |
Adey Lab
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| Street address |
3181 S.W. Sam Jackson Park Rd, RHH, L103
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| City |
Portland |
| State/province |
OR |
| ZIP/Postal code |
97239-3098 |
| Country |
USA |
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| Platforms (1) |
| GPL18573 |
Illumina NextSeq 500 (Homo sapiens) |
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| Samples (1) |
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| Relations |
| BioProject |
PRJNA521411 |
| SRA |
SRP184539 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE126261_RAW.tar |
8.9 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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