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Series GSE125970 Query DataSets for GSE125970
Status Public on Oct 21, 2019
Title Single-cell transcriptome analysis reveals differential nutrient absorption functions in human intestine
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary 14537 epithelial cells from adult human ileum, colon and rectum are performed single-cell transcriptome analysis, cell types and signature genes are presented, so as new representative genes. Bases on the gene expression pattern, difference of cell types, signaling changes, absorption funciton, inmmunity and hormone activity are analyzed. In addition, species diversity is briefly performed by analysis of human and mouse ileum single-cell database.
 
Overall design identify cell consititution and function difference of ileum, colon and rectum at single-cell level.
 
Contributor(s) Wang Y, Song W, Wang J, Wang T, Xiong X, Qi Z, Fu W, Yang X, Chen Y
Citation(s) 31753849
Submission date Jan 31, 2019
Last update date Feb 24, 2021
Contact name Ye-guang Chen
E-mail(s) 2971907429@qq.com
Organization name Tsinghua University
Department School of life science
Lab Molcell
Street address Tsinghua Road, Medical Building
City Beijing
ZIP/Postal code 100084
Country China
 
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (6)
GSM3587008 Ileum-1
GSM3587009 Ileum-2
GSM3587010 Colon-1
Relations
BioProject PRJNA518129
SRA SRP183081

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125970_cell_info.txt.gz 85.9 Kb (ftp)(http) TXT
GSE125970_raw_UMIcounts.txt.gz 35.8 Mb (ftp)(http) TXT
GSE125970_scale_data.txt.gz 374.1 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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