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Series GSE125728 Query DataSets for GSE125728
Status Public on Dec 23, 2019
Title Oscillatory cAMP Signaling Rapidly Alters H3K4 Methylation
Organism Rattus norvegicus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Non-coding RNA profiling by high throughput sequencing
Summary In this study we show that cAMP affects gene expression by altering H3K4me3 marks. Note, "Control" samples are untreated with cAMP.
 
Overall design Examination of nascent transcription and H3M4me3 marks in control, cAMP treated or cAMP treated then washed out primary Schwann cells
 
Contributor(s) Gaofeng W, David Wayne S, Tyler H
Citation(s) 31882444
Submission date Jan 28, 2019
Last update date Jan 08, 2020
Contact name David Wayne Sant
E-mail(s) david.sant@utah.edu
Phone 8018503669
Organization name University of Utah
Department Biomedical Informatics
Lab Karen Eilbeck
Street address 421 Wakara Way #140
City Salt Lake City
State/province Utah
ZIP/Postal code 84108
Country USA
 
Platforms (1)
GPL23945 Illumina HiSeq 3000 (Rattus norvegicus)
Samples (18)
GSM3581109 30min_H3K4me3_1
GSM3581110 30min_H3K4me3_2
GSM3581111 30min_H3K4me3_3
Relations
BioProject PRJNA517404
SRA SRP182642

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125728_H3K4me3.Combined.counts.csv.gz 636.2 Kb (ftp)(http) CSV
GSE125728_Merged_3.5_Hours_H3K4me3.bw 166.9 Mb (ftp)(http) BW
GSE125728_Merged_30_min_H3K4me3.bw 255.3 Mb (ftp)(http) BW
GSE125728_Merged_Control_H3K4me3.bw 203.1 Mb (ftp)(http) BW
GSE125728_RAW.tar 856.9 Mb (http)(custom) TAR (of BW, CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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