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Series GSE125449 Query DataSets for GSE125449
Status Public on Oct 06, 2019
Title Tumor cell biodiversity drives microenvironmental reprogramming in liver cancer
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Single-cell transcriptome profiling of liver cancer biospecimens from nine hepatocellular carcinoma and ten intrahepatic cholangiocarcinoma patients.
 
Overall design A total of 19 tumors were profiled. Set 1 contains scRNA-seq data of twelve samples, i.e., S16_P10_LCP18, S02_P01_LCP21, S10_P05_LCP23, S09_P04_LCP25, S08_P03_LCP26, S07_P02_LCP28, S11_P06_LCP29, S12_P07_LCP30, S20_P12_LCP35, S21_P13_LCP37, S15_P09_LCP38, and S19_P11_LCP39. Set 2 includes scRNA-seq data of seven samples, i.e., S351_P10_LCP34, S355_P13_LCP42, S358_P16_LCP46, S305_P06_LCP56, S300_P02_LCP60, 364_P21_LCP65, and S365_P22_LCP66. Detailed information can be found in samples.txt file of each Set.
***Due to patient privacy concerns, the submitter declares that patient data will be submitted to dbGaP.***
 
Contributor(s) Wang XW
Citation(s) 31588021
Submission date Jan 22, 2019
Last update date Oct 11, 2019
Contact name Xin Wei Wang
E-mail(s) xw3u@nih.gov
Phone 240-760-6858
Organization name National Cancer Institute
Department Laboratory of Human Carcinogenesis
Street address 37 Convent Drive
City Bethesda
State/province MARYLAND
ZIP/Postal code 20892-4255
Country USA
 
Platforms (2)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (19)
GSM4050085 S16_P10_LCP18
GSM4050086 S02_P01_LCP21
GSM4050087 S10_P05_LCP23
Relations
BioProject PRJNA516420

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125449_Set1_barcodes.tsv.gz 25.4 Kb (ftp)(http) TSV
GSE125449_Set1_genes.tsv.gz 154.7 Kb (ftp)(http) TSV
GSE125449_Set1_matrix.mtx.gz 25.5 Mb (ftp)(http) MTX
GSE125449_Set1_samples.txt.gz 32.7 Kb (ftp)(http) TXT
GSE125449_Set2_barcodes.tsv.gz 23.3 Kb (ftp)(http) TSV
GSE125449_Set2_genes.tsv.gz 149.9 Kb (ftp)(http) TSV
GSE125449_Set2_matrix.mtx.gz 18.3 Mb (ftp)(http) MTX
GSE125449_Set2_samples.txt.gz 30.4 Kb (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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