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Series GSE125310 Query DataSets for GSE125310
Status Public on Jan 19, 2019
Title Genome-wide maps of chromatin remodeler binding in acute myeloid leukemia cell line.
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We have used chromatin immunoprecipitation followed by high throughput sequencing to map regions of chromatin remodeler binding in Control and KDM6A knock down AML cells. We have used this data to determine KDM6A contribution to chromatin remodeler binding and thus understand its role in leukemogenesis.
 
Overall design Binding profile of the core ATP-ase subunit of the NuRD chromatin remodeler in Control and KDM6A knock down AML cell line.
 
Contributor(s) Sengupta A
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Submission date Jan 18, 2019
Last update date Mar 27, 2019
Contact name Amitava Sengupta
E-mail(s) mayukh@csiriicb.in
Phone +91 9883394773
Organization name CSIR - Indian Institute of Chemical Biology (Translational Research Unit of Excellence)
Department Cancer Biology & Inflammatory Disorder Division
Lab Stem Cell & Leukemia Lab
Street address CN 6, Sector V, Salt Lake
City Kolkata
State/province West Bengal
ZIP/Postal code 700091
Country India
 
Platforms (1)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
Samples (4)
GSM3568776 U937_shControl_2% Input
GSM3568777 U937_shControl_CHD4_ChIPSeq
GSM3568778 U937_shKDM6A_2% Input
Relations
BioProject PRJNA515835
SRA SRP180171

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE125310_RAW.tar 2.5 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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