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Series GSE124544 Query DataSets for GSE124544
Status Public on Apr 02, 2019
Title Kaiso is required for MTG16-dependent effects on colitis-associated carcinoma
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary The myeloid translocation gene family member MTG16 is a transcriptional corepressor that relies on the DNA-binding ability of other proteins to determine specificity. One such protein is the ZBTB family member Kaiso, and the MTG16:Kaiso interaction is necessary for repression of Kaiso target genes such as matrix metalloproteinase-7. Using the azoxymethane and dextran sodium sulfate (AOM/DSS) murine model of colitis-associated carcinoma, we previously determined that MTG16 loss accelerates tumorigenesis and inflammation. However, it was unknown whether this effect was modified by Kaiso-dependent transcriptional repression. To test for a genetic interaction between MTG16 and Kaiso in inflammatory carcinogenesis, we subjected single and double knockout (DKO) mice to the AOM/DSS protocol. Mtg16-/- mice demonstrated increased colitis and tumor burden; in contrast, disease severity in Kaiso-/- mice was equivalent to wild type controls. Surprisingly, Kaiso deficiency in the context of MTG16 loss reversed injury and pro-tumorigenic responses in the intestinal epithelium following AOM/DSS treatment, and tumor numbers were returned to near to wild type levels. Transcriptomic analysis of non-tumor colon tissue demonstrated that changes induced by MTG16 loss were widely mitigated by concurrent Kaiso loss, and DKO mice demonstrated downregulation of metabolism and cytokine-associated gene sets with concurrent activation of DNA damage checkpoint pathways as compared with Mtg16-/-. Further, Kaiso knockdown in intestinal enteroids reduced stem- and WNT-associated phenotypes, thus abrogating the induction of these pathways observed in Mtg16-/- samples. Together, these data suggest that Kaiso modifies MTG16-driven inflammation and tumorigenesis and suggests that Kaiso deregulation contributes to MTG16-dependent colitis and CAC phenotypes.
 
Overall design Adjacent normal colon tissue was harvested from WT, Kaiso-/-, Mtgt16-/-, and double knockout mice after conclusion of the AOM/DSS treatment protocol. 3 samples were used per genotype
 
Contributor(s) Short SP, Williams CS
Citation(s) 30858547
Submission date Jan 02, 2019
Last update date Apr 02, 2019
Contact name Christopher Williams
E-mail(s) christopher.s.williams@vumc.org
Phone 6153220320
Organization name Vanderbilt University Medical Center
Street address 2215-B Garland Ave, 1075 MRB4
City Nashville
State/province Tennessee
ZIP/Postal code 37232
Country USA
 
Platforms (1)
GPL24247 Illumina NovaSeq 6000 (Mus musculus)
Samples (12)
GSM3536205 WT colon 1
GSM3536206 WT colon 2
GSM3536207 WT colon 3
Relations
BioProject PRJNA512466
SRA SRP174997

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124544_16KO_DKO_gene_exp.xlsx 2.3 Mb (ftp)(http) XLSX
GSE124544_DKO_vs_WT.xlsx 2.5 Mb (ftp)(http) XLSX
GSE124544_WT_v_KaisoKO_gene_exp.xlsx 2.4 Mb (ftp)(http) XLSX
GSE124544_wt_16KO_gene_exp.xlsx 2.4 Mb (ftp)(http) XLSX
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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