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Series GSE124063 Query DataSets for GSE124063
Status Public on Aug 22, 2019
Title The Bone Marrow Protects and Optimizes Immunological Memory during Dietary Restriction
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary Mammals evolved in the face of fluctuating food availability. How the immune system adapts to transient nutritional stress remains poorly understood. Here, we show that memory T cells collapsed in secondary lymphoid organs in the context of dietary restriction (DR) but dramatically accumulated within the bone marrow (BM), where they adopted a state associated with energy conservation. This response was coordinated by glucocorticoids and associated with a profound remodeling of the BM compartment, which included an increase in T cell homing factors, erythropoiesis, and adipogenesis. Adipocytes and CXCR4-CXCL12 and S1P-S1P1R interactions contributed to enhanced T cell accumulation in BM during DR. Memory T cell homing to BM during DR was associated with enhanced protection against infections and tumors. Together, this work uncovers a fundamental host strategy to sustain and optimize immunological memory during nutritional challenges that involved a temporal and spatial reorganization of the memory pool within ‘‘safe haven’’ compartments.
 
Overall design Examiniation of T cells and whole tissue of dietary restriction versus normal condition with RNA-seq
 
Contributor(s) Collins N, Han S, Enamorado M, Link VM, Belkaid Y
Citation(s) 31442402
Submission date Dec 18, 2018
Last update date Jun 07, 2022
Contact name Verena Link
E-mail(s) verena.link@nih.gov
Organization name NIH
Department NIAID
Street address 4 Memorial Drive
City Bethesda
ZIP/Postal code 20892
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (20)
GSM3519918 RNAseq_whole_tissue_BM_Ctrl_rep1
GSM3519919 RNAseq_whole_tissue_BM_Ctrl_rep2
GSM3519920 RNAseq_whole_tissue_BM_Ctrl_rep3
Relations
BioProject PRJNA510644
SRA SRP173822

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE124063_RAW.tar 20.8 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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