GEO Publications
Handout
NAR 2024 (latest)
NAR 2002 (original)
All publications
FAQ
MIAME
Email GEO
NCBI
>
GEO
>
Accession Display
Not logged in |
Login
GEO help:
Mouse over screen elements for information.
Scope:
Self
Platform
Samples
Series
Family
Format:
HTML
SOFT
MINiML
Amount:
Brief
Quick
GEO accession:
Series GSE123998
Query DataSets for GSE123998
Status
Public on Nov 13, 2020
Title
EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
33188013
Submission date
Dec 17, 2018
Last update date
Dec 01, 2020
Contact name
Shankar Subramaniam
Organization name
University of California, San Diego
Department
Department of Bioengineering
Street address
9500 Gilman Drive
City
La Jolla
State/province
CA
ZIP/Postal code
92093-0412
Country
USA
Platforms (1)
GPL20301
Illumina HiSeq 4000 (Homo sapiens)
Samples (48)
Less...
More...
GSM3515138
ChIPSeq_NDC_iPSCNeuron_INPUT
GSM3515139
ChIPSeq_NDC_iPSCNeuron_H3K4Me3
GSM3515140
ChIPSeq_NDC_iPSCNeuron_H3K27Me3
GSM3515141
ChIPSeq_PSEN1_M146L_iPSCNeuron_INPUT
GSM3515142
ChIPSeq_PSEN1_M146L_iPSCNeuron_H3K4Me3
GSM3515143
ChIPSeq_PSEN1_M146L_iPSCNeuron_H3K27Me3
GSM3515188
RNASeq_NDC_iPSCNeuron_rep1
GSM3515189
RNASeq_NDC_iPSCNeuron_rep2
GSM3515190
RNASeq_NDC_iPSCNeuron_rep3
GSM3515191
RNASeq_NDC_iPSCNeuron_rep4
GSM3515192
RNASeq_PSEN1_M146L_iPSCNeuron_rep1
GSM3515193
RNASeq_PSEN1_M146L_iPSCNeuron_rep2
GSM3515194
RNASeq_PSEN1_M146L_iPSCNeuron_rep3
GSM3515195
RNASeq_PSEN1_M146L_iPSCNeuron_rep4
GSM3515196
RNASeq_PSEN1_A246E_iPSCNeuron_rep1
GSM3515197
RNASeq_PSEN1_A246E_iPSCNeuron_rep2
GSM3515198
RNASeq_PSEN1_A246E_iPSCNeuron_rep3
GSM3515199
RNASeq_PSEN1_A246E_iPSCNeuron_rep4
GSM3518442
ATACSeq_NDC_iPSCNeuron_rep1
GSM3518443
ATACSeq_NDC_iPSCNeuron_rep2
GSM3518444
ATACSeq_PSEN1_M146L_iPSCNeuron_rep1
GSM3518445
ATACSeq_PSEN1_M146L_iPSCNeuron_rep2
GSM4767215
ATACSeq_NDC_iPSCNeuron_rep3
GSM4767216
ATACSeq_NDC_iPSCNeuron_rep4
GSM4767217
ATACSeq_NDC_iPSCNeuron_rep5
GSM4767218
ATACSeq_PSEN1_A246E_iPSCNeuron_rep1
GSM4767219
ATACSeq_PSEN1_A246E_iPSCNeuron_rep2
GSM4767220
ATACSeq_PSEN1_H163R_iPSCNeuron_rep1
GSM4767221
ATACSeq_PSEN1_H163R_iPSCNeuron_rep2
GSM4767222
ATACSeq_PSEN1_H163R_iPSCNeuron_rep3
GSM4767223
ATACSeq_PSEN1_A431E_iPSCNeuron_rep1
GSM4767224
ATACSeq_PSEN1_A431E_iPSCNeuron_rep2
GSM4767225
ATACSeq_PSEN1_A431E_iPSCNeuron_rep3
GSM4767243
RNASeq_NDC_iPSCNeuron_rep5
GSM4767244
RNASeq_NDC_iPSCNeuron_rep6
GSM4767245
RNASeq_NDC_iPSCNeuron_rep7
GSM4767246
RNASeq_NDC_iPSCNeuron_rep8
GSM4767247
RNASeq_PSEN1_H163R_iPSCNeuron_rep1
GSM4767248
RNASeq_PSEN1_H163R_iPSCNeuron_rep2
GSM4767249
RNASeq_PSEN1_H163R_iPSCNeuron_rep3
GSM4767250
RNASeq_PSEN1_A431E_iPSCNeuron_rep1
GSM4767251
RNASeq_PSEN1_A431E_iPSCNeuron_rep2
GSM4767252
RNASeq_PSEN1_A431E_iPSCNeuron_rep3
GSM4767253
ChIPSeq_PSEN1_A246E_iPSCNeuron_INPUT 1
GSM4767254
ChIPSeq_PSEN1_A246E_iPSCNeuron_INPUT 2
GSM4767255
ChIPSeq_PSEN1_A246E_iPSCNeuron_H3K4Me3
GSM4767256
ChIPSeq_PSEN1_A246E_iPSCNeuron_H3K27Me3
GSM4767257
ChIPSeq_PSEN1_M146L_iPSCNeuron_REST
This SuperSeries is composed of the following SubSeries:
GSE123884
EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons [ChIP-Seq]
GSE123891
EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons [RNA-Seq]
GSE123997
EOFAD-causing mutations in psen1 orchestrate dedifferentiation through remodeling of the chromatin landscape in hiPSC-derived neurons [ATAC-Seq]
Relations
BioProject
PRJNA510451
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE123998_RAW.tar
792.6 Mb
(http)
(custom)
TAR (of BED, BW, FASTQ, GAPPEDPEAK, TXT)
SRA Run Selector
|
NLM
|
NIH
|
GEO Help
|
Disclaimer
|
Accessibility
|
Less...
More...