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Series GSE123815 Query DataSets for GSE123815
Status Public on May 21, 2020
Title Developmentally programmed tankyrase activity upregulates β-catenin and licenses progression of embryonic genome activation
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Embryonic genome activation (EGA) is orchestrated by an intrinsic developmental program initiated during oocyte maturation with translation of stored maternal mRNAs. Here we show that tankyrase, a poly(ADP-ribosyl) polymerase that regulates β-catenin levels, undergoes programmed translation during oocyte maturation and serves an essential role in mouse EGA. Newly translated TNKS triggers proteasomal degradation of axin, reducing targeted destruction of β-catenin and promoting β-catenin-mediated transcription of target genes, including Myc. MYC mediates ribosomal RNA transcription in 2-cell embryos, supporting global protein synthesis. Suppression of tankyrase activity using knockdown or chemical inhibition causes loss of nuclear β-catenin and global reductions in transcription and histone H3 acetylation. Chromatin and transcriptional profiling indicate that development arrests prior to the mid-2-cell stage, mediated in part by reductions in β-catenin and MYC. These findings indicate that post-transcriptional regulation of tankyrase serves as a ligand-independent developmental mechanism for post-translational β-catenin activation and is required to complete EGA.
 
Overall design Examination of open chromatin regions and transcription in 2-cell embryos following inhibition of tankyrase activity relative to controls.

Grant ID: 1ZIAES102985
Funding source: The Intramural Research Program of the NIH, National Institutes of Environmental Health Sciences
Title: Environmental influence on gametes and embryos
Recipient: Carmen J. Williams
 
Contributor(s) Gambini A, Stein P, Savy V, Grow EJ, Papas BN, Zhang Y, Kenan AC, Padilla-Banks E, Cairns BR, Williams CJ
Citation(s) 32442396
NIH grant(s)
Grant ID Grant title Affiliation Name
F32 HD094500 Improving Bovine Cloning Efficiency by Enhancing Reprogramming during Embryonic Genome Activation (EGA) UNIVERSITY OF UTAH Edward John Grow
Submission date Dec 13, 2018
Last update date Aug 20, 2020
Contact name Carmen J Williams
E-mail(s) WilliamsC5@niehs.nih.gov
Organization name NIH/NIEHS
Department Reproductive & Developmental Biology Laboratory
Street address 111 TW Alexander Dr.
City Research Triangle Park
State/province NC
ZIP/Postal code 27709
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (12)
GSM3511786 ATAC-DMSO-C
GSM3511787 ATAC-DMSO-D
GSM3511788 ATAC-IWR-C
Relations
BioProject PRJNA509915
SRA SRP173391

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE123815_IWR1-high_ATAC-seq_peaks.xlsx 70.6 Kb (ftp)(http) XLSX
GSE123815_IWR1-low_ATAC-seq_peaks.xlsx 44.9 Kb (ftp)(http) XLSX
GSE123815_IWR1_vs_DMSO_DESeq2_Foldchange_FPKM.xlsx 9.2 Mb (ftp)(http) XLSX
GSE123815_RAW.tar 2.2 Gb (http)(custom) TAR (of BIGWIG, BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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