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| Status |
Public on Mar 09, 2020 |
| Title |
Small RNA expression analysis in histone replacement-completed sperm |
| Organism |
Mus musculus |
| Experiment type |
Non-coding RNA profiling by high throughput sequencing
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| Summary |
Increasing evidence indicates that paternal dietary conditions influence the metabolic disorders of offspring. Previous studies suggested the involvement of epigenetic regulation for such phenomena, but the mechanism remains elusive. To reveal the molecular function of stress-dependent epigenetic regulator ATF7 in paternal inheritance of dietry effect on offpring phenotype, we analyzed ATF7-binding profiles in testicular germ cells by ChIP-seq, DNA methylation profiles in sperm by TGBS, small RNA expression profiles in HRCS by RNA-seq,and whole expression profiles in offspring liver by expression array analysis, using wild-type and ATF7 heterozygous mutant mice fed with control diet or low-protein diet.
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| |
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| Overall design |
Quantification of small RNA expression in histone replacement-completed sperm (HRCS) collected from four groups of mice; WT_CD, WT_LPD, ATF7+/-_CD and ATF7+/-_LPD.
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| Contributor(s) |
Yoshida K, Masafumi M, Fujita S, Toshio M, Ishii S |
| Citation(s) |
32197065 |
| |
| Submission date |
Dec 03, 2018 |
| Last update date |
Mar 24, 2020 |
| Contact name |
Keisuke Yoshida |
| E-mail(s) |
keiyoshida@rtc.riken.jp
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| Organization name |
RIKEN
|
| Lab |
Molecular Genetics Laboratory
|
| Street address |
3-1-1 Koyadai,
|
| City |
Tsukuba |
| State/province |
Ibaraki |
| ZIP/Postal code |
305-0074 |
| Country |
Japan |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
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| Samples (12)
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| This SubSeries is part of SuperSeries: |
| GSE123256 |
Molecular function of stress-dependent epigenetic regulator ATF7 in paternal inheritance of dietary effect on offspring phenotype |
|
| Relations |
| BioProject |
PRJNA507970 |
| SRA |
SRP172047 |
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