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Series GSE12289 Query DataSets for GSE12289
Status Public on Aug 04, 2008
Title Identifying Significant Temporal Variation in Time Course Microarray Data Without Replicates
Organism Rattus norvegicus
Experiment type Expression profiling by array
Summary An important component of time course microarray studies is the identification of genes that demonstrate significant time-dependent variation in their expression levels. Until recently available methods for performing such significance tests required replicates of individual time points. This paper describes a replicate-free method that was developed as part of a study of the estrous cycle in the rat mammary gland in which no replicate data was collected.

Keywords: developmental time course (time series) throughout the estrus cycle in rat mammary gland singlet data
Overall design Key points are examined in a time series over the four day estrus cycle of rat mammary gland in virgin (null parous). Singlet rats at each time point were used for mathematical analysis in this study for a total of 31 individual arrays.
Contributor(s) Billups S, Neville MC, Rudolph M, Porter W, Schedin P
Citation(s) 19323838
Submission date Jul 30, 2008
Last update date Jul 31, 2017
Contact name Michael C Rudolph
Phone 303.724.3502
Organization name UCHSC at Fitzsimons
Department Ob/Gyn
Lab Dr. Peggy Neville
Street address Mail Stop 8309, PO Box 6511
City Aurora
State/province CO
ZIP/Postal code 80045
Country USA
Platforms (1)
GPL1355 [Rat230_2] Affymetrix Rat Genome 230 2.0 Array
Samples (32)
GSM308788 Mammary Gland: 7 hours of estrus cycle
GSM308789 Mammary Gland: 7.5 hours of estrus cycle
GSM308790 Mammary Gland: 10 hours of estrus cycle
BioProject PRJNA113577

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE12289_RAW.tar 131.3 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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