|
| Status |
Public on Nov 10, 2020 |
| Title |
Gene expression-based, mouse primary BC CML after knockdown of AMD1 gene. |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report the gene expression profiling of mouse BC CML model which were knockdown with either shControl or shAMD1 constructs. By obtaining RNA from primary BC CML cells from those mice (n: 3 for each shRNA),we find that thousands gene were dysregulated by AMD1 knockdown.
|
| |
|
| Overall design |
Examination of gene expression profiling from 3 control BC CML mouse cells and 3 shRNA-mediated AMD1 knockdown in BC CML mouse cells
|
| |
|
| Contributor(s) |
Kwon H, Sari IN |
| Citation(s) |
33203990 |
| |
| Submission date |
Nov 21, 2018 |
| Last update date |
Feb 14, 2021 |
| Contact name |
Ita Novita Sari |
| E-mail(s) |
itanov07@gmail.com
|
| Phone |
+821021972195
|
| Organization name |
Soonchunhyang University
|
| Department |
Soonchunhyang Institute of Medi-Bio Science
|
| Street address |
Bongjeong-ro 25, Dongnam-gu
|
| City |
Cheonan |
| State/province |
Chungcheongnam-do |
| ZIP/Postal code |
31151 |
| Country |
South Korea |
| |
|
| Platforms (1) |
| GPL24247 |
Illumina NovaSeq 6000 (Mus musculus) |
|
| Samples (6)
|
|
| Relations |
| BioProject |
PRJNA506419 |
| SRA |
SRP170042 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE122812_1.Ontology_1.5fold_dw.xlsx |
1.0 Mb |
(ftp)(http) |
XLSX |
| GSE122812_1.Ontology_1.5fold_up.xlsx |
2.2 Mb |
(ftp)(http) |
XLSX |
| GSE122812_1.Ontology_match_dw.xlsx |
290.7 Kb |
(ftp)(http) |
XLSX |
| GSE122812_1.Ontology_match_up.xlsx |
491.9 Kb |
(ftp)(http) |
XLSX |
| GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4.xlsx |
4.4 Mb |
(ftp)(http) |
XLSX |
| GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update.csv.gz |
2.2 Mb |
(ftp)(http) |
CSV |
| GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update_1.5_fold.csv.gz |
261.0 Kb |
(ftp)(http) |
CSV |
| GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update_1.5_fold_with_FDR_0.1.csv.gz |
182.4 Kb |
(ftp)(http) |
CSV |
| GSE122812_1.shLacZ-1_shLacZ-2_shLacZ-3.vs.shAmd1-2_shAmd1-3_shAmd1-4_Update_1.5_fold_with_p_value_0.05.csv.gz |
206.4 Kb |
(ftp)(http) |
CSV |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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