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Series GSE122465 Query DataSets for GSE122465
Status Public on Aug 08, 2019
Title Single-cell RNA-seq of frequent and rare populations in mouse bone marrow
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This data set contains single-cell RNA sequencing data of mature immune cells, hematopoietic and immune progenitors, mesenchymal cells (CAR cells, fibroblasts, osteoblasts, chondrocytes, putative mesenchymal stem cells), endothelia, smooth muscle, and Schwann cells.
 
Overall design The following fractions were subjected to single-cell RNA-sequencing using 10x genomics: Total live bone marrow; Lineage-negative CD45-negative bone marrow; Lineage-CD45-CD71- bone marrow (obtained by crushing or flushing of bones); Lineage-CD45-CD71- bone-associated fraction (obtained by digesting bone chips); Lineage-Kit+ bone marrow.
 
Contributor(s) Baccin C, Al-Sabah J, Velten L, Trumpp A, Steinmetz LM, Haas SF
Citation https://www.biorxiv.org/content/10.1101/718395v1
Submission date Nov 13, 2018
Last update date Aug 08, 2019
Contact name Lars Velten
E-mail(s) lars.velten@embl.de
Organization name EMBL
Department Genome Biology
Lab Steinmetz Lab
Street address Meyerhofstr. 1
City Heidelberg
ZIP/Postal code 69117
Country Germany
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (7)
GSM3466897 Total Bone Marrow
GSM3466898 Lin-Kit+ Bone Marrow
GSM3466899 Lin-Cd45- Bone Marrow
This SubSeries is part of SuperSeries:
GSE122467 LCM-Seq of niches and single-cell RNA-seq of mouse bone marrow
Relations
BioProject PRJNA505312
SRA SRP168425

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE122465_FilteredCounts10x.csv.gz 16.8 Mb (ftp)(http) CSV
GSE122465_RAW.tar 20.8 Mb (http)(custom) TAR (of CSV)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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