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Series GSE121601 Query DataSets for GSE121601
Status Public on Jun 06, 2019
Title ChIP-seq of H3K27ac and CTCF in primary glioblastoma cultures
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We characterize H3K27ac and CTCF profiles of three primary glioblastoma cultures, and use them to bolster Hi-C datasets.
Overall design Paired inputs and ChIP experiments in duplicate for CTCF and H3K27ac for three independent cultures.
Contributor(s) Johnston MJ, Nikolic A, Gallo M
Citation(s) 31249064
Submission date Oct 22, 2018
Last update date Sep 05, 2019
Contact name Marco Gallo
Organization name University of Calgary
Department Department of Biochemistry & Molecular Biology
Street address 3330 Hospital Drive NW
City Calgary
State/province Alberta
ZIP/Postal code T2N4N1
Country Canada
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (18)
GSM3439929 G523 CTCF input
GSM3439930 G523 CTCF IP, replicate 1
GSM3439931 G523 CTCF IP, replicate 2
BioProject PRJNA497855
SRA SRP166319

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121601_RAW.tar 3.8 Gb (http)(custom) TAR (of BROADPEAK, NARROWPEAK, TDF)
GSE121601_union_G523_ctcf.bed.gz 497.1 Kb (ftp)(http) BED
GSE121601_union_G523_h3k27.bed.gz 514.3 Kb (ftp)(http) BED
GSE121601_union_G523_superEnhancers.bed.gz 4.8 Kb (ftp)(http) BED
GSE121601_union_G567_ctcf.bed.gz 491.5 Kb (ftp)(http) BED
GSE121601_union_G567_h3k27.bed.gz 1.0 Mb (ftp)(http) BED
GSE121601_union_G567_superEnhancers.bed.gz 24.8 Kb (ftp)(http) BED
GSE121601_union_G583_ctcf.bed.gz 557.4 Kb (ftp)(http) BED
GSE121601_union_G583_h3k27.bed.gz 494.5 Kb (ftp)(http) BED
GSE121601_union_G583_superEnhancers.bed.gz 12.9 Kb (ftp)(http) BED
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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