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Series GSE121417 Query DataSets for GSE121417
Status Public on Dec 05, 2019
Title Genome-wide contacts of rDNA units detected by 4C procedure in human genome [old.hs]
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary 4C procedure was used for analysis of genomic contacts of rDNA units in HEK 293T cells. The primers for 4C were selected downstream from EcoRI site at coordinate 30487 in rDNA sequence with Accession number U13369.1.
 
Overall design Examination of rDNA genome-wide contacts in HEK 293T cells using 4C approach.
 
Contributor(s) Tchurikov NA, Kravatsky YV, Kretova OV
Citation(s) 31694324
Submission date Oct 17, 2018
Last update date Dec 11, 2019
Contact name Nickolai Tchurikov
E-mail(s) tchurikov@eimb.ru
Organization name Engelhardt Institute of Molecular Biology
Department Department of Epigenetic Mechanisms of Gene Expression Regulation
Street address 32, Vavilova str.
City Moscow
ZIP/Postal code 119334
Country Russia
 
Platforms (1)
GPL18460 Illumina HiSeq 1500 (Homo sapiens)
Samples (2)
GSM3435445 4C-rDNA-old primers hs+ rep1
GSM3435446 4C-rDNA-old primers hs+ rep2
This SubSeries is part of SuperSeries:
GSE121418 Genome-wide contacts of rDNA units detected by 4C procedure in human genome
Relations
BioProject PRJNA497288
SRA SRP166016

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE121417_4C_hg19_old_hs+_intersect.bedGraph.gz 115.3 Kb (ftp)(http) BEDGRAPH
GSE121417_RAW.tar 7.6 Mb (http)(custom) TAR (of BEDGRAPH, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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