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| Status |
Public on Oct 01, 2019 |
| Title |
RNA-seq data from wildtype, STAT5A-knockout and STAT5B-knockout BCR/ABLp185+ transformed mouse bone marrow cell lines |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
RNA-Seq of immortalized Stat5a-/-, Stat5b-/-, and wildtype BCR/ABLp185+ cell lines was used to identify STAT5A and STAT5B specific target genes.
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| Overall design |
mRNA from immortalized Stat5a-/-, Stat5b-/-, and wildtype BCR/ABLp185+ cell lines (3 technical replicates) were prepared using the Lexogen SENSE mRNA-Seq library preparation kit. Single-end, 50bp sequencing was performed on an Illumina HiSeq-2500 sequencer. Reads were mapped to the GENECODE M13 genome.
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| Contributor(s) |
Grundschober E, Kollmann S, Maurer B, Grausenburger R, Hoelbl-Kovacic A, Sexl V |
| Citation(s) |
30679796 |
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| Submission date |
Oct 15, 2018 |
| Last update date |
Oct 01, 2019 |
| Contact name |
Veronika Sexl |
| Organization name |
University of Veterinary Medicine Vienna
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| Department |
Pharmacology / Toxikology
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| Lab |
Sexl
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| Street address |
Veterinaerplatz 1
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| City |
Vienna |
| ZIP/Postal code |
1210 |
| Country |
Austria |
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| Platforms (1) |
| GPL17021 |
Illumina HiSeq 2500 (Mus musculus) |
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| Samples (9)
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| Relations |
| BioProject |
PRJNA496473 |
| SRA |
SRP165740 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE121246_RAW.tar |
31.0 Mb |
(http)(custom) |
TAR (of TXT) |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data provided as supplementary file |
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