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Series GSE120575 Query DataSets for GSE120575
Status Public on Oct 05, 2018
Title Defining T cell states associated with response to checkpoint immunotherapy in melanoma
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary we profiled 16,291 immune cells from 48 tumor samples of melanoma patients treated with checkpoint inhibitors, using single-cell transcriptomics.
Overall design Tumors were disaggregated, sorted into CD45+ single cells, and profiled by Smart-seq2
Submitter states "As this is human data, raw sequencing files are submitted via dbGap."

dbGaP accession code: phs001680.v1.p1
Contributor(s) Sade-Feldman M, Yizhak K
Citation(s) 30388456
Submission date Sep 27, 2018
Last update date Mar 26, 2019
Contact name Keren Yizhak
Organization name Broad Institute of MIT and Harvard
Street address 415 Main street
City Cambridge
State/province MA
ZIP/Postal code 02142
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (48)
GSM3403554 Pre_P1
GSM3403555 Pre_P2
GSM3403556 Pre_P3
BioProject PRJNA493623

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE120575_Sade_Feldman_melanoma_single_cells_TPM_GEO.txt.gz 120.9 Mb (ftp)(http) TXT
GSE120575_patient_ID_single_cells.txt.gz 81.1 Kb (ftp)(http) TXT
Raw data not provided for this record
Processed data are available on Series record

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