NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE120435 Query DataSets for GSE120435
Status Public on Oct 21, 2019
Title small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis [RNA-Seq]
Organism Zea mays
Experiment type Expression profiling by high throughput sequencing
Summary We report the role of sRNAs populations during the induction of callus tissues from VS-535 maize embryos displaying contrasting in vitro embryogenic potential; characterized through Next-generation sequencing (NGS). We conclude that the Embryogenic Response during Maize Somatic Embryogenesis induction is closely related to sRNAs regulation and depends on the developmental stage of the explant.
 
Overall design Six RNA-seq samples were analyzed: Immature Embryo 15 Days After pollination (DAP; IE15); Immature Embryo 23 DAP ( IE23); Mature Embryo (ME); Calli obtained from IE15 at one month of subculture (C15); Calli obtained from IE23 at one month of subculture (C23); and Calli obtained from ME at one month of subculture (CM). Data generated by deep sequencing, in duplicate, using Illumina Hiseq2000 in paired end format
 
Contributor(s) Juárez-González VT, López-Ruiz BA, Baldrich P, Meyers BC, Dinkova TD, López-Ruiz BA
Citation(s) 31601893
Submission date Sep 25, 2018
Last update date Oct 21, 2019
Contact name TZVETANKA DIMITROVA DINKOVA
Organization name UNIVERSIDAD NACIONAL AUTONOMA DE MEXICO, FACULTAD DE QUIMICA
Department BIOCHEMESTRY
Lab L-103, CONJUNTO E
Street address CIRCUITO EXTERIOR, CIUDAD UNIVERSITARIA DELEGACION COYOACAN
City MEXICO CITY
State/province DISTRITO FEDERAL
ZIP/Postal code 04510
Country Mexico
 
Platforms (1)
GPL15463 Illumina HiSeq 2000 (Zea mays)
Samples (12)
GSM3400745 Immature Embryo 15 DAP Replicate 1
GSM3400746 Immature Embryo 15 DAP Replicate 2
GSM3400747 Immature Embryo 23 DAP Replicate 1
This SubSeries is part of SuperSeries:
GSE120438 small RNA-mediated regulation during Zea mays (maize) Somatic Embryogenesis
Relations
BioProject PRJNA493073
SRA SRP162547

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE120435_TDD_RSEM_Count_matrix.txt.gz 889.9 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap