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GEO accession:
Series GSE119736
Query DataSets for GSE119736
Status
Public on Sep 12, 2018
Title
Topoisomerase 3β Interacts with RNAi Machinery to Promote Heterochromatin Formation and Transcriptional Silencing in Drosophila
Organism
Drosophila melanogaster
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Citation(s)
30470739
Submission date
Sep 10, 2018
Last update date
Jun 22, 2020
Contact name
Supriyo De
Organization name
NIA-IRP, NIH
Department
Laboratory of Genetics and Genomics
Lab
Computational Biology & Genomics Core
Street address
251 Bayview Blvd
City
Baltimore
State/province
Maryland
ZIP/Postal code
21224
Country
USA
Platforms (1)
GPL13304
Illumina HiSeq 2000 (Drosophila melanogaster)
Samples (63)
Less...
More...
GSM3379545
w1118_RNAseq_repeat1
GSM3379546
w1118_RNAseq_repeat2
GSM3379547
w1118_RNAseq_repeat3
GSM3379548
w1118_RNAseq_repeat4
GSM3379549
Top3b26_RNAseq_repeat1
GSM3379550
Top3b26_RNAseq_repeat2
GSM3379551
Top3b26_RNAseq_repeat3
GSM3379552
Top3b26_RNAseq_repeat4
GSM3383496
w1118_HP1ChIP_repeat1
GSM3383497
w1118_HP1ChIP_repeat2
GSM3383498
w1118_HP1ChIP_repeat3
GSM3383499
AGO2_1-1-7_HP1ChIP_repeat1
GSM3383500
AGO2_1-1-7_HP1ChIP_repeat2
GSM3383501
Top3b26_HP1ChIP_repeat1
GSM3383502
Top3b26_HP1ChIP_repeat2
GSM3383503
Top3b26_HP1ChIP_repeat3
GSM3383504
Top3b26_AGO21-1-7_HP1ChIP_repeat1
GSM3383505
Top3b26_AGO21-1-7_HP1ChIP_repeat2
GSM3383506
FLAGAGO2_FLAGChIP_repeat1
GSM3383507
FLAGAGO2_FLAGChIP_repeat2
GSM3383508
w1118_FLAGChIP
GSM3383509
w1118_Top3bChIP_repeat1
GSM3383510
w1118_Top3bChIP_repeat2
GSM3383511
w1118_Top3bChIP_repeat3
GSM3383512
w1118_H3K9me2ChIP_repeat1
GSM3383513
w1118_H3K9me2ChIP_repeat2
GSM3383514
w1118_H3K9me2ChIP_repeat3
GSM3383515
w1118_H3K9me3ChIP_repeat1
GSM3383516
w1118_H3K9me3ChIP_repeat2
GSM3383517
w1118_H3K9me3ChIP_repeat3
GSM3383518
Top3b26_H3K9me2ChIP_repeat1
GSM3383519
Top3b26_H3K9me2ChIP_repeat2
GSM3383520
Top3b26_H3K9me2ChIP_repeat3
GSM3383521
Top3b26_H3K9me3ChIP_repeat1
GSM3383522
Top3b26_H3K9me3ChIP_repeat2
GSM3383523
Top3b26_H3K9me3ChIP_repeat3
GSM3383524
w1118_HP1ChIP_complementation
GSM3383525
Top3b26_HP1ChIP_complementation
GSM3383526
Act-Top3bWT_HP1ChIP_complementation
GSM3383527
Act-Top3bY332F_HP1ChIP_complementation
GSM3383528
Act-Top3bdRGG_HP1ChIP_complementation
GSM3383529
w1118_HP1ChIP_repeat1_input
GSM3383530
w1118_HP1ChIP_repeat2_input
GSM3383531
w1118_HP1ChIP_repeat3_input
GSM3383532
AGO2_1-1-7_HP1ChIP_input_repeat1
GSM3383533
AGO2_1-1-7_HP1ChIP_input_repeat2
GSM3383534
Top3b26_HP1ChIP_repeat1_input
GSM3383535
Top3b26_HP1ChIP_repeat2_input
GSM3383536
Top3b26_HP1ChIP_repeat3_input
GSM3383537
Top3b26_AGO21-1-7_HP1ChIP_repeat1_input
GSM3383538
Top3b26_AGO21-1-7_HP1ChIP_repeat2_input
GSM3383539
FLAGAGO2_FLAGChIP_input_repeat1
GSM3383540
FLAGAGO2_FLAGChIP_input_repeat2
GSM3383541
w1118_FLAGChIP_input
GSM3383542
w1118_Top3bChIP_repeat2_input
GSM3383543
w1118_Top3bChIP_repeat3_input
GSM3383544
w1118_input_Top3brp1_H3K9me23
GSM3383545
Top3b26_input_H3K9me23
GSM3383546
w1118_HP1ChIP_complementation_input
GSM3383547
Top3b26_HP1ChIP_complementation_input
GSM3383548
Act-Top3bWT_HP1ChIP_complementation_input
GSM3383549
Act-Top3bY332F_HP1ChIP_complementation_input
GSM3383550
Act-Top3bdRGG_HP1ChIP_complementation_input
This SuperSeries is composed of the following SubSeries:
GSE119626
Topoisomerase 3β Interacts with RNAi Machinery to Promote Heterochromatin Formation and Transcriptional Silencing in Drosophila [RNA-Seq]
GSE119777
Topoisomerase 3β Interacts with RNAi Machinery to Promote Heterochromatin Formation and Transcriptional Silencing in Drosophila [ChIP-Seq]
Relations
BioProject
PRJNA490272
Download family
Format
SOFT formatted family file(s)
SOFT
MINiML formatted family file(s)
MINiML
Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE119736_RAW.tar
2.3 Mb
(http)
(custom)
TAR (of BED, TXT)
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