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Series GSE119575 Query DataSets for GSE119575
Status Public on Aug 21, 2019
Title Genome-wide study of NF-YC11 regulatory network in rice
Organism Oryza sativa Japonica Group
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Rice NF-YC11 is a transcription factor that plays a key regulatory role in storage substance accumulation during rice grain filling. To reveal the transcription regulatory network of NF-YC11 in rice, we performed genome-wide identification of NF-YC11 targets by immunoprecipitation sequencing (ChIP-seq) analyses in the NF-YC11-overexpression plants.
 
Overall design Genome-wide identification binding sites of NF-YC11 in rice endosperm. Examination of 7 days after pollination (DAP) NF-YC11-FLAG rice endosperm with FLAG antibody and Input seres as control.
 
Contributor(s) Xiong Y, Yao J
Citation(s) 31211389
Submission date Sep 06, 2018
Last update date Aug 21, 2019
Contact name Yufei Xiong
Organization name Huazhong Agricultural University
Street address No. 1, Shizishan Street, Hongshan District
City Wuhan
State/province Hubei
ZIP/Postal code 430070
Country China
 
Platforms (1)
GPL13834 Illumina HiSeq 2000 (Oryza sativa Japonica Group)
Samples (2)
GSM3377855 Endosperm NF-YC11 ChIP
GSM3377856 Endosperm Input
Relations
BioProject PRJNA489628
SRA SRP159838

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SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE119575_MACS2_peaks.xlsx 336.4 Kb (ftp)(http) XLSX
GSE119575_MACS2_summits.bed.gz 54.7 Kb (ftp)(http) BED
GSE119575_RAW.tar 251.3 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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