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| Status |
Public on Sep 03, 2018 |
| Title |
Iron and Heme Coordinate Erythropoiesis through HRI-Mediated Regulation of Protein Translation and Gene Expression |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
Other
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| Summary |
Iron and heme play central roles in red blood cell production. However, the mechanisms by which iron and heme levels coordinate erythropoiesis remain incompletely understood. HRI is a heme-regulated kinase that controls translation by phosphorylating eIF2a. Here, we investigate the global impact of iron, heme and HRI on protein translation in vivo in murine primary erythroblasts using ribosome profiling. By defining the underlying changes in translation during iron and HRI deficiencies, we validate known regulators of this process, including Atf4, and identify novel pathways such as co-regulation of ribosomal protein mRNA translation. Surprisingly, we found that heme and HRI pathways, but not iron-regulated pathways, mediate the major protein translational and transcriptional responses to iron deficiency in erythroblasts in vivo and thereby identify previously unappreciated regulators of erythropoiesis. Our genome-wide study uncovers the major impact of the HRI-mediated integrated stress response for the adaptation to iron deficiency anemia.
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| Overall design |
Primary basophilic erythroblasts from E14.5 fetal livers (FLs) of Wild-type (Wt) and Hri-/- mice maintained under +Fe or -Fe conditions were sorted. FLs from embryos of the same mother were pooled before sorting. Two and three biological replicas of each condition were collected for preparations of Ribo-seq and mRNA-seq libraries, respectively.
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| Contributor(s) |
Zhang S, Chen J |
| Citation(s) |
31033440 |
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| Submission date |
Sep 02, 2018 |
| Last update date |
Jun 18, 2019 |
| Contact name |
Shuping Zhang |
| Organization name |
Massachusetts Institute of Technology
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| Street address |
77 Massachusetts Avenue
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| City |
Cambridge |
| State/province |
MA |
| ZIP/Postal code |
02139 |
| Country |
USA |
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| Platforms (1) |
| GPL13112 |
Illumina HiSeq 2000 (Mus musculus) |
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| Samples (21)
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| Relations |
| BioProject |
PRJNA488955 |
| SRA |
SRP159428 |
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