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Series GSE118987 Query DataSets for GSE118987
Status Public on Sep 03, 2018
Title The accessible chromatin landscape of the murine hippocampus at single-cell resolution
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We report a high depth single-cell combinatorial indexing (sci-)ATAC-seq map of the murine hippocampus from fresh and frozen tissue as well as cultured neurons
 
Overall design sci-ATAC-seq on fresh, frozen, and cultured neurons from the mouse hippocampus
 
Contributor(s) Adey AC, Torkenczy KA
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NIH grant(s)
Grant ID Grant title Affiliation Name
R35 GM124704 Defining the epigenetic landscape at single cell resolution OREGON HEALTH & SCIENCE UNIVERSITY Andrew Adey
DP2 HD088158 Charting the regulatory topography of the cell differentiation landscape with single-cell RNA-Seq. UNIVERSITY OF WASHINGTON Bruce Colston Trapnell
R01 NS099374 New roles for REST during brain maturation OREGON HEALTH & SCIENCE UNIVERSITY Gail Mandel
U54 DK107979 University of Washington Center for Nuclear Organization and Function UNIVERSITY OF WASHINGTON JAY ASHOK SHENDURE
Submission date Aug 23, 2018
Last update date Mar 22, 2019
Contact name Andrew Adey
E-mail adey@ohsu.edu
Organization name Oregon Health & Science University
Department MMG
Lab Adey Lab
Street address 3181 S.W. Sam Jackson Park Rd, RHH, L103
City Portland
State/province OR
ZIP/Postal code 97239-3098
Country USA
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (2)
GSM3356231 In Vivo sci-ATAC-seq
GSM3356232 In Vitro sci-ATAC-seq
Relations
BioProject PRJNA487622
SRA SRP158701

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118987_Combined.data.txt.gz 66.2 Mb (ftp)(http) TXT
GSE118987_RAW.tar 83.9 Mb (http)(custom) TAR (of TXT)
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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