|
| Status |
Public on Sep 03, 2018 |
| Title |
The accessible chromatin landscape of the murine hippocampus at single-cell resolution |
| Organism |
Mus musculus |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We report a high depth single-cell combinatorial indexing (sci-)ATAC-seq map of the murine hippocampus from fresh and frozen tissue as well as cultured neurons
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| |
|
| Overall design |
sci-ATAC-seq on fresh, frozen, and cultured neurons from the mouse hippocampus
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| |
|
| Contributor(s) |
Adey AC, Torkenczy KA |
| Citation missing |
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| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R35 GM124704 |
Defining the epigenetic landscape at single cell resolution |
OREGON HEALTH & SCIENCE UNIVERSITY |
Andrew Adey |
| DP2 HD088158 |
Charting the regulatory topography of the cell differentiation landscape with single-cell RNA-Seq. |
UNIVERSITY OF WASHINGTON |
Bruce Colston Trapnell |
| R01 NS099374 |
New roles for REST during brain maturation |
OREGON HEALTH & SCIENCE UNIVERSITY |
Gail Mandel |
| U54 DK107979 |
University of Washington Center for Nuclear Organization and Function |
UNIVERSITY OF WASHINGTON |
JAY ASHOK SHENDURE |
|
| Submission date |
Aug 23, 2018 |
| Last update date |
Mar 25, 2019 |
| Contact name |
Andrew Adey |
| E-mail(s) |
adey@ohsu.edu
|
| Organization name |
Oregon Health & Science University
|
| Department |
MMG
|
| Lab |
Adey Lab
|
| Street address |
3181 S.W. Sam Jackson Park Rd, RHH, L103
|
| City |
Portland |
| State/province |
OR |
| ZIP/Postal code |
97239-3098 |
| Country |
USA |
| |
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| Platforms (1) |
| GPL19057 |
Illumina NextSeq 500 (Mus musculus) |
|
| Samples (2) |
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| Relations |
| BioProject |
PRJNA487622 |
| SRA |
SRP158701 |
