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Series GSE118119 Query DataSets for GSE118119
Status Public on Aug 04, 2019
Title Inverse data-driven modelling and multiomics analysis reveals PHGDH as a metabolic signature of M2 macrophages
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary RNAseq data from C57BL/6 bone marrow-derived macrophages that were stimulated with IL-4 in the presence or absence of the PHGDH inhibitor CBR-5884.
 
Overall design BMDM were pre-treated with either 30 µM CBR-5884 (AxonMedchem) or solvent. Thereafter, 10 ng/ml IL-4 (Peprotech) was added and cells were harvested 24h later for RNA isolation.
 
Contributor(s) Wilson JL, Linke M, Weichhart T
Citation(s) 32023468
Submission date Aug 03, 2018
Last update date Feb 18, 2020
Contact name Thomas Weichhart
E-mail(s) thomas.weichhart@meduniwien.ac.at
Organization name Medical University of Vienna
Department Center for Pathobiochemistry and Genetics
Street address Waehringerstraße 10
City Vienna
ZIP/Postal code 1090
Country Austria
 
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (5)
GSM3318866 CBR_3
GSM3318867 CBR_4
GSM3318868 CBR_5
Relations
BioProject PRJNA484506
SRA SRP156337

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE118119_RAW.tar 39.3 Mb (http)(custom) TAR (of GTF)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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