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GEO accession:
Series GSE117735
Query DataSets for GSE117735
Status
Public on Mar 11, 2019
Title
The ATPase module of mammalian SWI/SNF family complexes mediates subcomplex identity and catalytic activity-independent genomic targeting
Organism
Homo sapiens
Experiment type
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary
This SuperSeries is composed of the SubSeries listed below.
Overall design
Refer to individual Series
Web link
https://doi.org/10.1038/s41588-019-0363-5
Citation(s)
30858614
Submission date
Jul 26, 2018
Last update date
Jun 10, 2019
Contact name
Cigall Kadoch
Organization name
Dana Farber Cancer Institute
Department
Pediatric Oncology
Lab
Kadoch Lab
Street address
450 Brookline Avenue
City
Boston
State/province
Massachusetts
ZIP/Postal code
02215
Country
USA
Platforms (1)
GPL18573
Illumina NextSeq 500 (Homo sapiens)
Samples (63)
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GSM3290735
BIN67_Control_ATAC-Seq_Rep1
GSM3290736
BIN67_SMARCA4_ATAC-Seq_Rep1
GSM3290737
BIN67_SMARCA2_ATAC-Seq_Rep1
GSM3290738
BIN67_T910M_ATAC-Seq_Rep1
GSM3290739
BIN67_Control_ATAC-Seq_Rep2
GSM3290740
BIN67_SMARCA2_ATAC-Seq_Rep2
GSM3290741
BIN67_SMARCA4_ATAC-Seq_Rep2
GSM3290742
BIN67_K785R_ATAC-Seq_Rep1
GSM3290900
Bin67_SMARCA4_RNA-Seq_Rep1
GSM3290901
Bin67_T910M_RNA-Seq_Rep1
GSM3290902
Bin67_SMARCA4_RNA-Seq_Rep2
GSM3290903
Bin67_SMARCA4_RNA-Seq_Rep3
GSM3290904
Bin67_T910M_RNA-Seq_Rep2
GSM3290905
Bin67_SMARCA2_RNA-Seq_Rep1
GSM3290906
Bin67_Control_RNA-Seq_Rep1
GSM3290907
Bin67_Control_RNA-Seq_Rep2
GSM3290908
Bin67_SMARCA2_RNA-Seq_Rep2
GSM3290909
Bin67_K785R_RNA-Seq_Rep1
GSM3290910
Bin67_K785R_RNA-Seq_Rep2
GSM3307881
BIN-67_BRG1_Control_ChIP-Seq_Rep1
GSM3307882
BIN-67_Input_Control_ChIP-Seq
GSM3307883
BIN-67_BRG1_SMARCA4_ChIP-Seq
GSM3307884
BIN-67_BAF155_SMARCA4_ChIP-Seq
GSM3307885
BIN-67_ARID2_SMARCA4_ChIP-Seq
GSM3307886
BIN-67_SS18_SMARCA4_ChIP-Seq
GSM3307887
BIN-67_Input_SMARCA4_ChIP-Seq
GSM3307888
BIN-67_BAF155_Null_ChIP-Seq
GSM3307889
BIN-67_45D_Null_ChIP-Seq
GSM3307890
SCCOHT-1_BAF155_Null_ChIP-Seq
GSM3307891
SCCOHT-1_45D_Null_ChIP-Seq
GSM3307892
BIN-67_BRG1_Control_ChIP-Seq_Rep2
GSM3307893
BIN-67_SS18_Control_ChIP-Seq
GSM3307894
BIN-67_BAF155_Control_ChIP-Seq
GSM3307895
BIN-67_ARID2_Control_ChIP-Seq
GSM3307896
BIN-67_45D_Control_ChIP-Seq
GSM3307897
BIN-67_BRG1_SMARCA4.T910M_ChIP-Seq
GSM3307898
BIN-67_ARID2_SMARCA4.T910M_ChIP-Seq
GSM3307899
BIN-67_BAF155_SMARCA4.T910M_ChIP-Seq
GSM3307900
BIN-67_SS18_SMARCA4.T910M_ChIP-Seq
GSM3307901
BIN-67_45D_SMARCA4.T910M_ChIP-Seq
GSM3307902
BIN-67_Input_SMARCA4.K785R_ChIP-Seq
GSM3307903
BIN-67_BRG1_SMARCA4.K785R_ChIP-Seq
GSM3307904
BIN-67_BAF155_SMARCA4.K785R_ChIP-Seq
GSM3307905
BIN-67_ARID2_SMARCA4.K785R_ChIP-Seq
GSM3307906
BIN-67_45D_SMARCA4.K785R_ChIP-Seq
GSM3307907
BIN-67_SS18_SMARCA4.K785R_ChIP-Seq
GSM3307908
BIN-67_Input_SMARCA4.T910M_ChIP-Seq
GSM3307909
BIN-67_H3K4me1_Control_ChIP-Seq
GSM3307910
BIN-67_H3K27ac_Control_ChIP-Seq
GSM3307911
BIN-67_H3K27me3_Control_ChIP-Seq
GSM3307912
BIN-67_H3K9me3_Control_ChIP-Seq
GSM3307913
BIN-67_H3K4me1_SMARCA4.T910M_ChIP-Seq
GSM3307914
BIN-67_H3K27ac_SMARCA4.T910M_ChIP-Seq
GSM3307915
BIN-67_H3K4me1_SMARCA4_ChIP-Seq
GSM3307916
BIN-67_H3K27ac_SMARCA4_ChIP-Seq
GSM3494152
BIN-67_BAF155_Control_ChIP-Seq_Rep2
GSM3494153
BIN-67_DPF2_SMARCA4_ChIP-Seq
GSM3494154
BIN-67_MLL3_Control_ChIP-Seq
GSM3494155
BIN-67_MLL3_SMARCA4_ChIP-Seq
GSM3494156
BIN-67_MLL3_SMARCA4.T910M_ChIP-Seq
GSM3494157
BIN-67_MLL4_Control_ChIP-Seq
GSM3494158
BIN-67_MLL4_SMARCA4_ChIP-Seq
GSM3494159
BIN-67_MLL4_SMARCA4.T910M_ChIP-Seq
This SuperSeries is composed of the following SubSeries:
GSE117301
The mSWI/SNF ATPase module mediates subcomplex identity and non-catalytic targeting in SCCOHT [ATAC-seq]
GSE117311
The mSWI/SNF ATPase module mediates subcomplex identity and non-catalytic targeting in SCCOHT [RNA-seq]
GSE117734
The mSWI/SNF ATPase module mediates subcomplex identity and non-catalytic targeting in SCCOHT [ChIP-seq]
Relations
BioProject
PRJNA483037
Download family
Format
SOFT formatted family file(s)
SOFT
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Series Matrix File(s)
TXT
Supplementary file
Size
Download
File type/resource
GSE117735_RAW.tar
11.3 Gb
(http)
(custom)
TAR (of BW, TXT)
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