GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
Series GSE117335 Query DataSets for GSE117335
Status Public on Jul 19, 2018
Title Relative accessability of HSV1 genomic DNA compared with its host cell (ATAC-seq)
Organisms Homo sapiens; Human alphaherpesvirus 1 strain KOS
Experiment type Other
Summary To compare the relative accessability of HSV1 DNA compared with its host DNA, we performed ATAC-seq analysis.
Overall design Cells were left uninfected; infected for 2, 4, or 6 hours; or infected for 6 hours in the presence of phosphonoacetic acid to prevent genome replication. ATAC-seq was performed as per standard published protocols.
Contributor(s) McSwiggen DT, Tjian R, Darzacq X
Citation(s) 31038454
Submission date Jul 18, 2018
Last update date May 29, 2019
Contact name David Trombley McSwiggen
Organization name University of California Berkeley
Department Molecular and Cell Biology
Lab Tjian
Street address 470 Li Ka Shing Center
City Berkeley
State/province CA
ZIP/Postal code 97406
Country USA
Platforms (1)
GPL25348 Illumina HiSeq 2500 (Homo sapiens; Human alphaherpesvirus 1 strain KOS)
Samples (15)
GSM3291173 U2OS Uninfected, pooled replicates
GSM3291174 HSV1 infected, 2hpi, pooled replicates
GSM3291175 HSV1 infected, 4hpi, pooled replicates
BioProject PRJNA481773
SRA SRP154375

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE117335_RAW.tar 6.2 Gb (http)(custom) TAR (of BW, TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap