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Series GSE116974 Query DataSets for GSE116974
Status Public on Jul 13, 2018
Title Maternal methionine supplementation alters the epigenome of the offspring [RNA-Seq]
Organism Bos taurus
Experiment type Expression profiling by high throughput sequencing
Summary Maternal nutrition can induce modifications in the epigenome of the fetus, resulting in gene expression alterations and impacting future performance. Epigenetic changes are related to nutrition via the one carbon cycle, which involves aminoacid methionine. We hypothesized that an increased dietary methionine in beef cows during early gestation will impact the whole-genome DNA methylation and transcriptome of the offspring.
 
Overall design Brangus-Angus crossbred cows were randomly assigned to one of two nutritional treatments during days -30 to +90 relative to the breeding season: Control Treatment (low-quality limpograss hay supplemented with molasses and urea) and Methionine Treatment (control diet supplemented with 3.7g of rumen-protected methionine per head per day). Longissimus dorsi muscle samples were collected from 10 bull calves per maternal treatment at one month of age. Muscle tissue samples were subjected to RNA extraction, library generation, and subsequent sequencing.
 
Contributor(s) Amorín R, Peñagaicano F
Citation(s) 33008289, 34717556
Submission date Jul 12, 2018
Last update date Nov 10, 2021
Contact name Francisco Peñagaricano
E-mail(s) fpenagarican@wisc.edu
Organization name University of Wisconsin-Madison
Department Animal and Dairy Sciences
Street address 1675 Observatory Drive
City Madison
State/province Wisconsin
ZIP/Postal code 53706
Country USA
 
Platforms (1)
GPL21659 Illumina HiSeq 3000 (Bos taurus)
Samples (19)
GSM3266239 6153_METHIONINE (rna-seq)
GSM3266243 6438_METHIONINE (rna-seq)
GSM3266244 6415_METHIONINE (rna-seq)
This SubSeries is part of SuperSeries:
GSE117195 Maternal methionine supplementation alters the epigenome of the offspring
Relations
BioProject PRJNA480770
SRA SRP153142

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Supplementary file Size Download File type/resource
GSE116974_RAW.tar 2.1 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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