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Series GSE116632 Query DataSets for GSE116632
Status Public on Jul 06, 2018
Title AHR ChIP-seq in lymphoblastoid cell line
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary ChIP-seq was done on one lymphoblastoid cell lines for vehicle control, or 3-MC agonist treatment to identify AHR binding regions throughout the genome. We identified 17,688 common binding peaks between all ChIP treatments
 
Overall design A lymphoblastoid cell line was treated in duplicate with vehicle control or 1uM 3-MC 24 hours before cells were collected for ChIP-seq. Sequencing was carried out on Illumina HiSeq 4000
 
Contributor(s) Weinshlboum RM, Neavin DR, Lee J, Ye Z, Wang L
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Jul 05, 2018
Last update date Mar 21, 2019
Contact name Richard Weinshilboum
E-mail(s) Weinshilboum.Richard@mayo.edu
Organization name Mayo Clinic
Department Molecular Pharmacology and Experimental Therapeutics
Street address 200 1st Street SW, GO 19-460
City Rochester
State/province Minnesota
ZIP/Postal code 55901
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (6)
GSM3244480 CA12_3MC_1 (chip-seq)
GSM3244481 CA12_3MC_2 (chip-seq)
GSM3244482 CA12_3MC_2_input (chip-seq)
This SubSeries is part of SuperSeries:
GSE116638 Role of AHR in lymphoblastoid cell lines
Relations
BioProject PRJNA479757
SRA SRP152200

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116632_OverlappedPeaksUniq.bed.gz 185.8 Kb (ftp)(http) BED
GSE116632_RAW.tar 1.7 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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