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Series GSE116470 Query DataSets for GSE116470
Status Public on Aug 22, 2018
Title A Single-Cell Atlas of Cell Types, States, and Other Transcriptional Patterns from Nine Regions of the Adult Mouse Brain
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary We report 690K single-cell transcriptomes from nine different brain regions from adult mice (Frontal and Posterior Cortex, Hippocampus, Thalamus, Cerebellum, Striatum, Globus Pallidus externus/Nucleus Basalis, Entopeduncular / Subthalamic Nuclei, & Substantia Nigra / Ventral Tegmental Area).
Overall design Single-cell suspensions were made from P60-70 C57BL/6 male mice (3-7 replicates / mouse) and sampled with Drop-seq. On average, each cell received 17.4 K Illumina sequencing reads from which we counted 2.2K transcripts and 1.2 K genes. In total, we measure 31.7K unique genes.
Contributor(s) Saunders A, McCarroll S
Citation(s) 30096299
Submission date Jun 29, 2018
Last update date Mar 25, 2019
Contact name Arpiar Saunders
Organization name Harvard Medical School
Department Genetics
Lab McCarroll Lab
Street address 77 Avenue Louis Pasteur
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (104)
GSM3239579 Cerebellum [P60CBRep1P1]
GSM3239580 Cerebellum [P60CBRep1P2]
GSM3239581 Cerebellum [P60CBRep1P3]
BioProject PRJNA478603
SRA SRP151685

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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116470_F_GRCm38.81.P60Cerebellum_ALT.raw.dge.txt.gz 80.2 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60Cortex_noRep5_FRONTALonly.raw.dge.txt.gz 586.6 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60Cortex_noRep5_POSTERIORonly.raw.dge.txt.gz 346.1 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60EntoPeduncular.raw.dge.txt.gz 54.1 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60GlobusPallidus.raw.dge.txt.gz 190.4 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60Hippocampus.raw.dge.txt.gz 424.1 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60Striatum.raw.dge.txt.gz 269.7 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60SubstantiaNigra.raw.dge.txt.gz 126.7 Mb (ftp)(http) TXT
GSE116470_F_GRCm38.81.P60Thalamus.raw.dge.txt.gz 259.8 Mb (ftp)(http) TXT
GSE116470_metacells.BrainCellAtlas_Saunders_version_2018.04.01.csv.gz 8.6 Mb (ftp)(http) CSV
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