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Series GSE116189 Query DataSets for GSE116189
Status Public on Sep 01, 2018
Title Identification of Androgen Receptor binding sites in hormone-depleted melanoma cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the genome wide identification of AR binding sites in hormone-deprived A375 melanoma cell line, with either endogenous levels of the lncRNA SLNCR, or a vector expressing SLNCR1.
Overall design Comparison of AR binding sites in hormone-deprived A375 melanoma cells transfected with either an empty- or SLNCR1 lncRNA expressing vector.
Contributor(s) Schmidt K, Novina C
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Submission date Jun 23, 2018
Last update date Mar 26, 2019
Contact name Carl Novina
Organization name Dana-Farber Cancer Institute
Department Cancer Immunology
Lab Carl Novina
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (3)
GSM3212791 Input DNA_for_AR
GSM3212792 ChIP-seq_A375 with empty vector
GSM3212793 ChIP-seq_A375 with SLNCR1
This SubSeries is part of SuperSeries:
GSE116191 Global identification of Androgen Receptor and EGR1 binding sites in melanoma reveals enriched co-binding at genes regulated by the lncRNA SLNCR
BioProject PRJNA477662
SRA SRP151198

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Supplementary file Size Download File type/resource
GSE116189_RAW.tar 549.1 Mb (http)(custom) TAR (of BW)
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Raw data are available in SRA
Processed data provided as supplementary file

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