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Series GSE116189 Query DataSets for GSE116189
Status Public on Sep 01, 2018
Title Identification of Androgen Receptor binding sites in hormone-depleted melanoma cells
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We report the genome wide identification of AR binding sites in hormone-deprived A375 melanoma cell line, with either endogenous levels of the lncRNA SLNCR, or a vector expressing SLNCR1.
 
Overall design Comparison of AR binding sites in hormone-deprived A375 melanoma cells transfected with either an empty- or SLNCR1 lncRNA expressing vector.
 
Contributor(s) Schmidt K, Novina C
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Submission date Jun 23, 2018
Last update date Mar 26, 2019
Contact name Carl Novina
E-mail(s) carl_novina@dfci.harvard.edu
Organization name Dana-Farber Cancer Institute
Department Cancer Immunology
Lab Carl Novina
Street address 450 Brookline Ave
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (1)
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (3)
GSM3212791 Input DNA_for_AR
GSM3212792 ChIP-seq_A375 with empty vector
GSM3212793 ChIP-seq_A375 with SLNCR1
This SubSeries is part of SuperSeries:
GSE116191 Global identification of Androgen Receptor and EGR1 binding sites in melanoma reveals enriched co-binding at genes regulated by the lncRNA SLNCR
Relations
BioProject PRJNA477662
SRA SRP151198

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE116189_RAW.tar 549.1 Mb (http)(custom) TAR (of BW)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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