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Series GSE115577 Query DataSets for GSE115577
Status Public on Jan 08, 2019
Title Tumor & Tumor-Adj Gene Expression in the Nurses' Health Study Cohorts
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Third-party reanalysis
Summary Gene expression data from the Nurses' Health Study
 
Overall design Total of 1577 samples which includes 882 tumor and 695 tumor-adjacent tissues from participants of the Nurses' Heath Study I and II diagnosed with invasive breast cancer. This deposit contains 467 files; remaining 1110 files are in GSE93601.
Web link http://doi: 10.1158/1055-9965.EPI-18-0863, doi: 10.1007/s10549-018-5034-1
 
Contributor(s) Kensler KH, Sankar VN, Wang J, Zhang X, Rubadue CA, Baker GM, Parker JS, Hoadley KA, Stancu AL, Pyle ME, Collins LC, Hunter DJ, Eliassen AH, Hankinson SE, Tamimi RM, Heng YJ
Citation(s) 30591591, 30387004, 33136151, 36376974
NIH grant(s)
Grant ID Grant title Affiliation Name
U19 CA148065 Discovery, Biology and Risk of Inherited Variants in Breast Cancer HARVARD SCHOOL OF PUBLIC HEALTH David John HUNTER
UM1 CA186107 Long Term Multidisciplinary Study of Cancer in Women: The Nurses Health Study BRIGHAM AND WOMEN'S HOSPITAL Meir Stampfer
UM1 CA176726 Life Course Cancer Epidemiology Cohort in Women HARVARD SCHOOL OF PUBLIC HEALTH Walter C. Willett
P01 CA087969 Dietary and Hormonal Determinants of Cancer in Women BRIGHAM AND WOMEN'S HOSPITAL Meir Stampfer
R01 CA166666 Assessing the role of androgens in breast cancer risk University of Massachusetts-Amherst Susan E Hankinson
F31 CA192462 Androgen receptor expression and signaling and breast cancer risk and progression HARVARD SCHOOL OF PUBLIC HEALTH Kevin Hughes Kensler
Submission date Jun 11, 2018
Last update date Dec 01, 2022
Contact name Rulla M Tamimi
E-mail(s) RULLA.TAMIMI@CHANNING.HARVARD.EDU
Phone 617-525-0862
Organization name Brigham and Women's Hospital
Department Medicine
Lab Channing Division of Network Medicine
Street address 181 Longwood Avenue
City Boston
State/province MA
ZIP/Postal code 02115
Country USA
 
Platforms (2)
GPL17585 [HTA-2_0] Affymetrix Human Transcriptome Array 2.0 [probe set (exon) version]
GPL22920 [hGlue_3_0] Custom Affymetrix Human Transcriptome Array
Samples (1577)
GSM3182768 FFPE X117741745 [X89_1_FFPE_PLATE1]
GSM3182769 FFPE X119154006 [X86_100_FFPE_PLATE1]
GSM3182770 FFPE X119644672 [X23_1000]
Relations
BioProject PRJNA475582

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115577_Combined_annotations_multipleprobesfiltered_noY_1577FFPEsamples_30Jan18.txt.gz 559.6 Kb (ftp)(http) TXT
GSE115577_RAW.tar 30.6 Gb (http)(custom) TAR (of CEL)
GSE115577_data_1110_25334probes_GEO.csv.gz 112.8 Mb (ftp)(http) CSV
Processed data are available on Series record
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