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Series GSE115541 Query DataSets for GSE115541
Status Public on Oct 26, 2018
Title Chromatin and tissue plasticity precede commitment to intestinal differentiation during endoderm development
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
Summary Intestinal differentiation during endoderm development
We used RNA-sequencing to profile gene expression changes during the embryonic development of the gastrointestinal tract.
Overall design ATAC-seq, RNA-seq and CDX2 ChIP-Seq analysis of purified mouse embryonic epithelial cells from the developing mouse gastrointestinal tract.
Contributor(s) Banerjee KK, Saxena M, Kumar N, Chen L, Cavazza A, Toke N, O'Neill NK, Madha S, Jadhav U, Verzi MP, Shivdasani RA
Citation(s) 30366903, 30745430
Submission date Jun 08, 2018
Last update date Mar 25, 2019
Contact name Ramesh Shivdasani
Organization name Dana Farber Cancer Institute
Department Medical Oncology
Lab Shivdasani
Street address 450 Brookline Ave. Dana 720D
City Boston
State/province MA
ZIP/Postal code 02215
Country USA
Platforms (1)
GPL19057 Illumina NextSeq 500 (Mus musculus)
Samples (74)
GSM3181671 WT Adult Ileum Villus ATACseq replicate1
GSM3181672 Cdx2-/- Adult Ileum Villus ATACseq replicate1
GSM3181673 WT P1 FS ATACseq replicate1
BioProject PRJNA475296
SRA SRP150100

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Supplementary file Size Download File type/resource
GSE115541_ATAC-seq.bigwig.tar.gz 4.1 Gb (ftp)(http) TAR
GSE115541_ChIP-seq.bigwig.tar.gz 1.2 Gb (ftp)(http) TAR
GSE115541_RNAseq_RawRead_Counts_All_Samples.txt.gz 982.3 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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