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Series GSE115371 Query DataSets for GSE115371
Status Public on Jun 11, 2018
Title RNA-seq and DNA methylomes of germinating rice and developing coleoptiles (RNA-Seq)
Organism Oryza sativa
Experiment type Expression profiling by high throughput sequencing
Summary RNAseq profiling of seeds and 7 time points during germination in rice under aerobic and anerobic conditions, as well as following re-oxygenation.
 
Overall design Total RNA was extracted from samples collected at each time point in triplicate. The time points were: 0 h (dry seed), 1 h, 3 h, 12 h, 24 h, 2 days, 3 days and 4 days under aerobic (A) and anaerobic (N) conditions, as well as 3‐day‐old seedlings grown under anaerobic conditions that were switched to air for 1 day.
 
Contributor(s) Narsai R
Citation(s) 27859855
Submission date Jun 05, 2018
Last update date Jun 13, 2018
Contact name Reena Narsai
Organization name La trobe University
Street address 5 Ring road
City Bundoora
ZIP/Postal code 3083
Country Australia
 
Platforms (1)
GPL25149 Illumina HiSeq 1500 (Oryza sativa)
Samples (48)
GSM3176761 dry seed 0 h Replicate 1
GSM3176762 dry seed 0 h Replicate 2
GSM3176763 dry seed 0 h Replicate 3
This SubSeries is part of SuperSeries:
GSE115373 RNA-seq and DNA methylomes of germinating rice and developing coleoptiles
Relations
BioProject PRJNA474721
SRA SRP149823

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE115371_0hv1N.txt.gz 1.9 Mb (ftp)(http) TXT
GSE115371_0hv24A.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_0hv24N.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_0hv4dA.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_0hv4dN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_12Av24A.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_12Nv24N.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_1Av3A.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_1Nv3N.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_24Av2dA.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_24Av4dA.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_24Nv2dN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_24Nv4dN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_2dAv3dA.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_2dNv3dN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_3Av12A.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_3Nv12N.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_3dAv4dA.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_3dNv4dN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_12AN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_1AN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_24AN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_2dAN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_3AN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_3dAN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_4dAN.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_4dAv3N1A.txt.gz 1.8 Mb (ftp)(http) TXT
GSE115371_gene_exp_4dNv3N1A.txt.gz 1.8 Mb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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