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Series GSE114879 Query DataSets for GSE114879
Status Public on Aug 03, 2018
Title Genome-wide distribution of two histone modifications, H3K4me3 and H3K27me3, in soybean embryos and seedlings
Organism Glycine max
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In this study, we examined the genome-wide deposition of two opposing histone modifications H3K4me3 and H3K27me3, in mid-maturation (stage B1) soybean embryos.
Overall design Distribution of two histone modifications, H3K4me3 and H3K27me3, in soybean cotyledon, early , mid and late maturation stage embryos and 8 day post-imbibition seedlings. For each developmental stage, ChIP for each histone modification, as well as H3-associated chromatin (control) were obtained for two biological replicates. A total of 30 samples were sequenced using the Illumina HiSeq2000 platform.
Contributor(s) Pelletier J, Baden R, Golberg RB, Harada JJ
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Submission date May 24, 2018
Last update date Aug 03, 2018
Contact name John Harada
Organization name University of California
Department Plant Biology
Lab Harada lab
Street address One Shields Avenue
City Davis
State/province CA
ZIP/Postal code 95616
Country USA
Platforms (1)
GPL15008 Illumina HiSeq 2000 (Glycine max)
Samples (30)
GSM3152855 GmMM_H3K4me3_br1
GSM3152856 GmMM_H3K4me3_br2
GSM3152857 GmMM_H3K27me3_br1
BioProject PRJNA472968
SRA SRP148884

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SOFT formatted family file(s) SOFTHelp
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Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE114879_AA1-K27_cat-W200-G600-islands-summary-FDR0.5.bed.gz 583.1 Kb (ftp)(http) BED
GSE114879_AA1-K4_cat_macs2b_peaks.bed.gz 658.4 Kb (ftp)(http) BED
GSE114879_COT-K27_cat-W200-G600-islands-summary-FDR.05.bed.gz 666.8 Kb (ftp)(http) BED
GSE114879_COT-K4_cat_peaks.bed.gz 691.7 Kb (ftp)(http) BED
GSE114879_EM-K4_cat_macs2_peaks.bed.gz 709.6 Kb (ftp)(http) BED
GSE114879_EM_K27_cat-W200-G600-islands-summary-FDR0.05.bed.gz 469.3 Kb (ftp)(http) BED
GSE114879_MM-K27_cat-W200-G600-islands-summary-FDR0.05.bed.gz 504.7 Kb (ftp)(http) BED
GSE114879_MM-K4_cat_macs2_peaks.bed.gz 750.0 Kb (ftp)(http) BED
GSE114879_SDLG-K27_cat-W200-G600-islands-summary-FDR0.5.bed.gz 662.7 Kb (ftp)(http) BED
GSE114879_SDLG-K4_cat_peaks.bed.gz 822.3 Kb (ftp)(http) BED
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