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| Status |
Public on Aug 03, 2018 |
| Title |
Genome-wide distribution of two histone modifications, H3K4me3 and H3K27me3, in soybean embryos and seedlings |
| Organism |
Glycine max |
| Experiment type |
Genome binding/occupancy profiling by high throughput sequencing
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| Summary |
In this study, we examined the genome-wide deposition of two opposing histone modifications H3K4me3 and H3K27me3, in mid-maturation (stage B1) soybean embryos.
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| Overall design |
Distribution of two histone modifications, H3K4me3 and H3K27me3, in soybean cotyledon, early , mid and late maturation stage embryos and 8 day post-imbibition seedlings. For each developmental stage, ChIP for each histone modification, as well as H3-associated chromatin (control) were obtained for two biological replicates. A total of 30 samples were sequenced using the Illumina HiSeq2000 platform.
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| Contributor(s) |
Pelletier J, Baden R, Golberg RB, Harada JJ |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| Submission date |
May 24, 2018 |
| Last update date |
Aug 03, 2018 |
| Contact name |
John Harada |
| E-mail(s) |
jjharada@ucdavis.edu
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| Organization name |
University of California
|
| Department |
Plant Biology
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| Lab |
Harada lab
|
| Street address |
One Shields Avenue
|
| City |
Davis |
| State/province |
CA |
| ZIP/Postal code |
95616 |
| Country |
USA |
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| Platforms (1) |
| GPL15008 |
Illumina HiSeq 2000 (Glycine max) |
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| Samples (30)
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| Relations |
| BioProject |
PRJNA472968 |
| SRA |
SRP148884 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE114879_AA1-K27_cat-W200-G600-islands-summary-FDR0.5.bed.gz |
583.1 Kb |
(ftp)(http) |
BED |
| GSE114879_AA1-K4_cat_macs2b_peaks.bed.gz |
658.4 Kb |
(ftp)(http) |
BED |
| GSE114879_COT-K27_cat-W200-G600-islands-summary-FDR.05.bed.gz |
666.8 Kb |
(ftp)(http) |
BED |
| GSE114879_COT-K4_cat_peaks.bed.gz |
691.7 Kb |
(ftp)(http) |
BED |
| GSE114879_EM-K4_cat_macs2_peaks.bed.gz |
709.6 Kb |
(ftp)(http) |
BED |
| GSE114879_EM_K27_cat-W200-G600-islands-summary-FDR0.05.bed.gz |
469.3 Kb |
(ftp)(http) |
BED |
| GSE114879_MM-K27_cat-W200-G600-islands-summary-FDR0.05.bed.gz |
504.7 Kb |
(ftp)(http) |
BED |
| GSE114879_MM-K4_cat_macs2_peaks.bed.gz |
750.0 Kb |
(ftp)(http) |
BED |
| GSE114879_SDLG-K27_cat-W200-G600-islands-summary-FDR0.5.bed.gz |
662.7 Kb |
(ftp)(http) |
BED |
| GSE114879_SDLG-K4_cat_peaks.bed.gz |
822.3 Kb |
(ftp)(http) |
BED |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
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