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Series GSE113931 Query DataSets for GSE113931
Status Public on Jun 12, 2018
Title High-resolution comparative analysis of great ape genomes
Organisms Pan troglodytes; Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary We couple long-read sequence assembly, full-length cDNA sequencing, and a multi-platform scaffolding approach to produce ab initio chimpanzee and orangutan genome assemblies where most genes are complete, gaps are closed, and novel gene models are identified. We further analyzed the overlap between structural variants in the human genome and gene expression differences in human and chimpanzee cells, including iPS-derived organoid radial glia cells.
Overall design Single cell mRNA sequencing of iPS-derived neural progenitor cells using the Fluidigm C1 system
Contributor(s) Pollen A, Eichler E
Citation(s) 29880660
Submission date May 01, 2018
Last update date Mar 27, 2019
Contact name Alex Aaron Pollen
Organization name UCSF
Department Neurology
Lab Pollen
Street address 35 Medical Center Way
City San Francisco
State/province California
ZIP/Postal code 94143-0525
Country USA
Platforms (2)
GPL16791 Illumina HiSeq 2500 (Homo sapiens)
GPL19148 Illumina HiSeq 2500 (Pan troglodytes)
Samples (117)
GSM3139746 S11.C6
GSM3139747 S8.B2
GSM3139748 S6.A3
BioProject PRJNA470992
SRA SRP145426

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113931_RGcounts.txt.gz 3.4 Mb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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