NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE113714 Query DataSets for GSE113714
Status Public on Jun 04, 2018
Title ChIP-Seq of H4K5acK8ac and BRD2 in H23 NSCLC cell line treated with 500 nM JQ1 for 24h
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Changes in acetylation of histone H4 are a common hallmark of cancer cells. In leukemia cells, histone H4 is characterized by loss of K16 mono-acetylation. Bromodomain proteins specifically recognize acetylated lysines and have been used as a target for anti cancer drug, JQ1 and iBET. Although acetylation and de-acetylation of histone H4 have been shown to have big impact in cancer cells, little attention has been focused on histone H4-acetylation at a genome level. To uncover potential epigenetic role of hyper-acetylated histone H4 at a genome-wide level in cancer cell, we generated a novel monoclonal antibody specifically recognizing histone H4 with at least two acetylated lysine residues (H4K5ac+K8ac). At the genome-wide level, hyper-acetylated histone H4 is associated with promoter and regulatory element (active enhancer, eRNA and super enhancer). We show that diacetylation at K5 and K8 of histone H4 co-localizes H3K27ac and BRD2 in the majority of active enhancer and promoters. However BRD2 has a stronger association with H4K5acK8ac. Furthermore we identified two specific chromatin states, which separately contain either H3K27ac or acetylated histone H4. Although JQ1 led to global reduction of BRD2 binding on the chromatin, only local changes of histone H4 multi-acetylation were observed upon BET inhibition by JQ1
 
Overall design ChIP-Seq of H4K5acK8ac and BRD2 in H23 NSCLC cell line treated with 500 nM JQ1 for 24h
 
Citation(s) 30080437
Submission date Apr 26, 2018
Last update date Mar 27, 2019
Contact name Aki Minoda
E-mail(s) akiko.minoda@riken.jp
Phone +81-(0)45-503-9309
Organization name RIKEN
Department CLST
Lab DGT
Street address 1-7-22 Suehiro-cho Tsurumi-ku W421
City Yokohama
State/province Kanagawa
ZIP/Postal code 230-0045
Country Japan
 
Platforms (1)
GPL11154 Illumina HiSeq 2000 (Homo sapiens)
Samples (8)
GSM3112635 ChIP-seq BRD2 +JQ1 (spike in) replicate 1
GSM3112636 ChIP-seq BRD2 +JQ1 (spike in) replicate 2
GSM3112637 ChIP-seq H4K5acK8ac + JQ1 (spike in) replicate 1
This SubSeries is part of SuperSeries:
GSE113715 ChIP-Seq and CAGE profiling of cell lines
Relations
BioProject PRJNA453774
SRA SRP143364

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113714_RAW.tar 3.8 Mb (http)(custom) TAR (of BED, BROADPEAK)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap