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| Status |
Public on Apr 30, 2018 |
| Title |
UMI-count modeling and differential expression analysis for single-cell RNA sequencing |
| Organism |
Homo sapiens |
| Experiment type |
Expression profiling by high throughput sequencing
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| Summary |
Single cell RNA-seq of the human alveolar rhabdomyosarcoma cell line Rh41. We also inlcude a bulk RNA-seq study of unsorted and sorted cells using CD44 as a marker
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| Overall design |
Single cell RNA-seq of Rh41 using the 10x Genomics. For bulk RNA-seq, there are three batches, each corresponds to three samples: sorted CD44 high, sorted CD44 low and unsorted. C2, C6, C7: CD44high subspopulation (Batch 1/2/3); C3, C4, C5: CD44low subpopulation (Batch 1/2/3); C1, C8, C9: CD44 unsorted (Batch 1/2/3)
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| Contributor(s) |
Chen W, Easton J, Chen X |
| Citation(s) |
29855333, 31566233 |
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| Submission date |
Apr 25, 2018 |
| Last update date |
Dec 31, 2019 |
| Contact name |
Xiang Chen |
| E-mail(s) |
xiang.chen@stjude.org
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| Organization name |
St. Jude Children's Research Hospital
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| Street address |
262 Danny Thomas Place
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| City |
Memphis |
| State/province |
TN |
| ZIP/Postal code |
38105 |
| Country |
USA |
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| Platforms (1) |
| GPL20301 |
Illumina HiSeq 4000 (Homo sapiens) |
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| Samples (10)
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| Relations |
| BioProject |
PRJNA453548 |
| SRA |
SRP142609 |
| Supplementary file |
Size |
Download |
File type/resource |
| GSE113660_RAW.tar |
89.5 Mb |
(http)(custom) |
TAR (of MTX, TSV) |
| GSE113660_bulk_htseq_count.txt.gz |
525.1 Kb |
(ftp)(http) |
TXT |
SRA Run Selector |
| Raw data are available in SRA |
| Processed data are available on Series record |
| Processed data provided as supplementary file |
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