NCBI Logo
GEO Logo
   NCBI > GEO > Accession DisplayHelp Not logged in | LoginHelp
GEO help: Mouse over screen elements for information.
          Go
Series GSE113572 Query DataSets for GSE113572
Status Public on Feb 03, 2020
Title Gene expression profiles of wild-type and PERK-deficient cells during activation of OXPHOS
Organism Homo sapiens
Experiment type Expression profiling by high throughput sequencing
Summary Intracellular ATP is mainly produced by the glycolysis pathway in culture cells incubated with high-glucose medium, whereas ATP production is switched to the OXPHOS pathway by culturing with the no-glucose medium. To elucidate the potential function of PERK during activation of OXPHOS pathway, we perfomed RNA-sequencing analayais using wild-type and PERK-deficient HEK293 cells.
 
Overall design Examination of gene expression in wild-type and PERK-deficient HEK293 cells during activation of OXPHOS.
 
Contributor(s) Nishitoh H, Kato H, Tanimoto K
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 24, 2018
Last update date Feb 04, 2020
Contact name Hideki Nishitoh
E-mail(s) nishitoh@med.miyazaki-u.ac.jp
Organization name University of Miyazaki
Department Department of Medical Sciences
Lab Laboratory of Biochemistry and Molecular Biology
Street address 5200 Kihara, Kiyotake
City Miyazaki City
State/province Miyazaki Prefecture
ZIP/Postal code 889-1692
Country Japan
 
Platforms (1)
GPL10999 Illumina Genome Analyzer IIx (Homo sapiens)
Samples (2)
GSM3109231 HEK293 WT
GSM3109232 HEK293 PERK-KO
Relations
BioProject PRJNA453130
SRA SRP142437

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE113572_RAW.tar 1.6 Mb (http)(custom) TAR (of TXT)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

| NLM | NIH | GEO Help | Disclaimer | Accessibility |
NCBI Home NCBI Search NCBI SiteMap