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Series GSE112997 Query DataSets for GSE112997
Status Public on Jun 17, 2018
Title Temporal profiling of redox-dependent heterogeneity in single cells
Organism Saccharomyces cerevisiae
Experiment type Expression profiling by high throughput sequencing
Summary The cellular redox status plays an essential role in diverse cellular functions, including proliferation, protein homeostasis, and aging. Thus even cells with identical genetic background but different redox status behave differently. Here, we propose a non-laborious and robust methodology to quantify cell-to- cell redox-dependent variability within thousands of cells, detect oxidation levels in cytosol, mitochondria, and peroxisome, and sort cells based on their redox status. We report that cells of the same age have a bi-modular distribution of reduced and oxidized cells starting in the late logarithmic phase. Although the ratio between the oxidized and reduced subpopulations changes during chronological aging, their growth, proteomic and transcriptomic features are conserved during their first days of chronological aging. A comparative proteomic analysis identified three key proteins, Hsp30, Dhh1, and Pnc1, which affect basal oxidation levels and may serve as first line of defense proteins in redox homeostasis.
 
Overall design The dataset includes 12 3'RNA-Seq samples.
 
Contributor(s) Friedman N
Citation(s) 29869985
Submission date Apr 11, 2018
Last update date Mar 13, 2019
Contact name Nir Friedman
E-mail(s) nir@cs.huji.ac.il
Organization name The Hebrew University of Jerusalem
Street address Givat Ram
City Jerusalem
ZIP/Postal code 9190401
Country Israel
 
Platforms (1)
GPL19756 Illumina NextSeq 500 (Saccharomyces cerevisiae)
Samples (12)
GSM3093028 48h oxidized - replicate 1
GSM3093029 48h oxidized - replicate 2
GSM3093030 48h oxidized - replicate 3
Relations
BioProject PRJNA449708
SRA SRP139596

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112997_rnadata_ppm.txt.gz 200.0 Kb (ftp)(http) TXT
SRA Run SelectorHelp
Raw data are available in SRA
Processed data are available on Series record

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