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Series GSE112897 Query DataSets for GSE112897
Status Public on Aug 19, 2018
Title The marked diversity of unique cortical enhancers enables the generation of neuron-specific tools by Enhancer-Driven Gene Expression (EDGE)
Organism Mus musculus
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary Detection of enhancers in mouse cortical subregions
 
Overall design Identifying active enhancers through H3K27ac and H3K4me2 ChIP-seq to distinguish differences in Enhancer-Driven Gene Expression (EDGE) among closely related mouse cortical subregions
 
Contributor(s) Cotney J, Wilderman A
Citation missing Has this study been published? Please login to update or notify GEO.
Submission date Apr 09, 2018
Last update date Mar 19, 2019
Contact name Justin Cotney
Organization name UConn Health
Department Genetics and Genome Sciences
Street address 400 Farmington Avenue
City Farmington
State/province CT
ZIP/Postal code 06030-6403
Country USA
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (23)
GSM3090920 ACC_1_H3K27ac
GSM3090921 ACC_1_H3K4me2
GSM3090922 ACC_1_Input
Relations
BioProject PRJNA449442

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112897_ACC_reproducible_H3K27acEnrichedRegions.00001.sorted.bed.gz 665.9 Kb (ftp)(http) BED
GSE112897_ACC_reproducible_H3K27acEnrichedRegions.00001.sorted.enhancer.bed.gz 387.1 Kb (ftp)(http) BED
GSE112897_ACC_reproducible_H3K4me2EnrichedRegions.00001.sorted.bed.gz 746.0 Kb (ftp)(http) BED
GSE112897_ACC_reproducible_H3K4me2EnrichedRegions.00001.sorted.enhancer.bed.gz 470.1 Kb (ftp)(http) BED
GSE112897_LEC_reproducible_H3K27acEnrichedRegions.00001.sorted.bed.gz 583.2 Kb (ftp)(http) BED
GSE112897_LEC_reproducible_H3K27acEnrichedRegions.00001.sorted.enhancer.bed.gz 320.7 Kb (ftp)(http) BED
GSE112897_LEC_reproducible_H3K4me2EnrichedRegions.00001.sorted.bed.gz 663.0 Kb (ftp)(http) BED
GSE112897_LEC_reproducible_H3K4me2EnrichedRegions.00001.sorted.enhancer.bed.gz 401.3 Kb (ftp)(http) BED
GSE112897_MEC_reproducible_H3K27acEnrichedRegions.00001.enhancer.bed.gz 86.3 Kb (ftp)(http) BED
GSE112897_MEC_reproducible_H3K27acEnrichedRegions.00001.sorted.bed.gz 176.6 Kb (ftp)(http) BED
GSE112897_MEC_reproducible_H3K27acEnrichedRegions.00001.sorted.enhancer.bed.gz 86.3 Kb (ftp)(http) BED
GSE112897_MEC_reproducible_H3K4me2EnrichedRegions.00001.sorted.bed.gz 409.0 Kb (ftp)(http) BED
GSE112897_MEC_reproducible_H3K4me2EnrichedRegions.00001.sorted.enhancer.bed.gz 202.9 Kb (ftp)(http) BED
GSE112897_RAW.tar 55.2 Gb (http)(custom) TAR (of BOWTIE, BW)
GSE112897_RSC_reproducible_H3K27acEnrichedRegions.00001.sorted.bed.gz 574.6 Kb (ftp)(http) BED
GSE112897_RSC_reproducible_H3K27acEnrichedRegions.00001.sorted.enhancer.bed.gz 338.0 Kb (ftp)(http) BED
GSE112897_RSC_reproducible_H3K4me2EnrichedRegions.00001.sorted.bed.gz 639.8 Kb (ftp)(http) BED
GSE112897_RSC_reproducible_H3K4me2EnrichedRegions.00001.sorted.enhancer.bed.gz 394.7 Kb (ftp)(http) BED
Raw data are available in SRA
Processed data provided as supplementary file
Processed data are available on Series record

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