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Series GSE112797 Query DataSets for GSE112797
Status Public on Oct 03, 2018
Title Kinetic analysis of TGFbeta-induced EMT in NMuMG/E9 cells
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary To investigate the transcriptional remodelling during EMT, we treated normal murine mammary gland epithelial cells with TGFbeta for 0, 2h, 6h, 12h, 24h, 36h, 48h, 60h, 72h, 96h, 168h and 240h. Using WGCNA and pathway enrichment analysis we identified multiple gene expression modules that were enriched in general, signaling, metabolic or stuctural pathways highly relevant for EMT.
Overall design RNA sequencing of NMuMG/E9 cells induced to undergo EMT by treatment with TGFbeta from 0-10 days.
Contributor(s) Saxena M, Meyer-Schaller N, Ivanek R, Christofori G
Citation(s) 30108334
Submission date Apr 06, 2018
Last update date Nov 17, 2021
Contact name DBM Bioinformatics Core Facility
Phone +41612073541
Organization name University of Basel
Department Departement of Biomedicine
Street address Hebelstrasse 20
City Basel
State/province BS
ZIP/Postal code 4053
Country Switzerland
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (24)
GSM3083817 Sample1_0h rep1
GSM3083818 Sample2_2h rep1
GSM3083819 Sample3_6h rep1
This SubSeries is part of SuperSeries:
GSE115376 Transcription (co)factor and miRNA regulatory landscape of EMT
BioProject PRJNA449023
SRA SRP137808

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112797_counts.txt.gz 761.9 Kb (ftp)(http) TXT
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Raw data are available in SRA
Processed data are available on Series record

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