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Series GSE112698 Query DataSets for GSE112698
Status Public on May 20, 2018
Title Mouse embryonic stem cells (mESCs) differentiation towards ventral hindbrain neuronal cell types [d0-d3.5]
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary mESCs treated with retinoic acid (RA) and a Shh agonist (SAG) recapitulated ventral hindbrain development and produced a population of neural progenitors with a minor presence of other cell types.
 
Overall design The differentiation in mESCs was induced by RA and SAG in monolayer condition. The cells were collected every day and processed for RNA isolation and RNA-seq.
 
Contributor(s) Ericson J, Alekseenko Z
Citation(s) 29893885
Submission date Apr 04, 2018
Last update date Mar 21, 2019
Contact name Johan Ericson
E-mail johan.ericson@ki.se
Organization name Karolinska Instituet
Department Cell and Molecular Biology
Lab Johan Ericson's Group
Street address Solnav├Ągen 9
City Stockholm
ZIP/Postal code 171 65
Country Sweden
 
Platforms (1)
GPL17021 Illumina HiSeq 2500 (Mus musculus)
Samples (11)
GSM3081038 WT_ESCs rep1
GSM3081039 WT_ESCs rep2
GSM3081040 WT_d1 rep1
Relations
BioProject PRJNA448752
SRA SRP137144

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE112698_Temporal_WT_Counts.txt.gz 489.9 Kb (ftp)(http) TXT
GSE112698_Temporal_WT_Voomed.txt.gz 1.6 Mb (ftp)(http) TXT
GSE112698_Temporal_WT_fpkms.txt.gz 1.0 Mb (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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