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Status |
Public on Aug 08, 2019 |
Title |
RNA-seq, ChIP-seq and MNase-seq in WT, fpa mutant and bdr1,2,3 mutant Arabidopsis seedlings |
Organism |
Arabidopsis thaliana |
Experiment type |
Expression profiling by high throughput sequencing Genome binding/occupancy profiling by high throughput sequencing
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Summary |
This SuperSeries is composed of the SubSeries listed below.
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Overall design |
Refer to individual Series
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Citation(s) |
31554790 |
NIH grant(s) |
Grant ID |
Grant title |
Affiliation |
Name |
R01 GM075060 |
Molecular analysis of the autonomous pathway |
INDIANA UNIVERSITY |
SCOTT MICHAELS |
|
|
Submission date |
Mar 28, 2018 |
Last update date |
Nov 07, 2019 |
Contact name |
Pascal GP Martin |
E-mail(s) |
pascal.martin@inrae.fr
|
Organization name |
INRAE
|
Department |
UMR1332 BFP
|
Lab |
FDFE
|
Street address |
71 avenue Edouard Bourlaux
|
City |
Villenave d'Ornon |
ZIP/Postal code |
33140 |
Country |
France |
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Platforms (2) |
GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
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Samples (111)
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This SuperSeries is composed of the following SubSeries:
|
GSE112440 |
Gene expression profiling in wild-type, fpa mutant and bdrs triple mutant Arabidopsis seedlings |
GSE112441 |
Gene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis seedlings |
GSE112442 |
Gene expression profiling (RNA-seq) in wild-type and bdrs triple mutant Arabidopsis seedlings in response to light or to a heat shock |
GSE113059 |
Genome-wide occupancy of BDR1, BDR2 and FPA (ChIP-seq) |
GSE113076 |
Genome-wide profiling of nucleosomes (MNase-seq), total H3, H3K4me2, H3K4me3 and H3K36me3 (native ChIP-seq) in wild-type, fpa mutant and bdrs triple mutant |
GSE113078 |
Genome-wide profiling (ChIP-seq) of RNA polymerase II in wild-type, fpa mutant and bdrs triple mutant |
GSE131772 |
Genome-wide occupancy of BDR1 and BDR3 (ChIP-seq) |
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Relations |
BioProject |
PRJNA446041 |