|
| Status |
Public on Aug 08, 2019 |
| Title |
RNA-seq, ChIP-seq and MNase-seq in WT, fpa mutant and bdr1,2,3 mutant Arabidopsis seedlings |
| Organism |
Arabidopsis thaliana |
| Experiment type |
Expression profiling by high throughput sequencing
Genome binding/occupancy profiling by high throughput sequencing
|
| Summary |
This SuperSeries is composed of the SubSeries listed below.
|
| |
|
| Overall design |
Refer to individual Series
|
| |
|
| Citation(s) |
31554790 |
| NIH grant(s) |
| Grant ID |
Grant title |
Affiliation |
Name |
| R01 GM075060 |
Molecular analysis of the autonomous pathway |
INDIANA UNIVERSITY |
SCOTT MICHAELS |
|
| Submission date |
Mar 28, 2018 |
| Last update date |
Nov 07, 2019 |
| Contact name |
Pascal GP Martin |
| E-mail(s) |
Pascal.Martin@inra.fr, pascmart@iu.edu
|
| Organization name |
INRA
|
| Lab |
ToxAlim
|
| Street address |
180 chemin de Tournefeuille, BP 93173
|
| City |
Toulouse Cedex 3 |
| ZIP/Postal code |
31027 |
| Country |
France |
| |
|
| Platforms (2) |
| GPL13222 |
Illumina HiSeq 2000 (Arabidopsis thaliana) |
| GPL19580 |
Illumina NextSeq 500 (Arabidopsis thaliana) |
|
| Samples (111)
|
|
| This SuperSeries is composed of the following SubSeries:
|
| GSE112440 |
Gene expression profiling in wild-type, fpa mutant and bdrs triple mutant Arabidopsis seedlings |
| GSE112441 |
Gene expression profiling by RNA-seq of wild-type, fpa mutant, bdr1 mutant, bdr2 mutant, bdr3 mutant and bdrs triple mutant Arabidopsis seedlings |
| GSE112442 |
Gene expression profiling (RNA-seq) in wild-type and bdrs triple mutant Arabidopsis seedlings in response to light or to a heat shock |
| GSE113059 |
Genome-wide occupancy of BDR1, BDR2 and FPA (ChIP-seq) |
| GSE113076 |
Genome-wide profiling of nucleosomes (MNase-seq), total H3, H3K4me2, H3K4me3 and H3K36me3 (native ChIP-seq) in wild-type, fpa mutant and bdrs triple mutant |
| GSE113078 |
Genome-wide profiling (ChIP-seq) of RNA polymerase II in wild-type, fpa mutant and bdrs triple mutant |
| GSE131772 |
Genome-wide occupancy of BDR1 and BDR3 (ChIP-seq) |
|
| Relations |
| BioProject |
PRJNA446041 |
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