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Series GSE111933 Query DataSets for GSE111933
Status Public on Aug 15, 2019
Title Genome-wide DNA methylation analysis of non-cancerous urothelium obtained from patients with urothelial carcinomas and corresponding cancerous tissue
Organism Homo sapiens
Experiment type Methylation profiling by genome tiling array
Summary The aim of this study was to establish criteria for carcinogenetic risk estimation in the urothelium. Forty-six samples of non-cancerous urothelium showing no remarkable histological findings obtained from patients with urothelial carcinomas (N), and 46 samples of the corresponding cancerous tissue (T), i.e. 92 tissue samples in total, were analyzed. Genome-wide DNA methylation analysis was performed using the Infinium HumanMethylation 450K BeadChip.
 
Overall design Bisulphite converted DNA from the 92 samples were hybridised to the Illumina Infinium HumanMethylation 450K BeadChip.
 
Contributor(s) Tsumura K, Arai E, Kanai Y
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Submission date Mar 16, 2018
Last update date Aug 16, 2019
Contact name Yae Kanai
E-mail(s) ykanai@keio.jp
Organization name Keio University School of Medicine
Street address 35, Shinano-machi
City Shinjyuku-ku
State/province Tokyo
ZIP/Postal code 160-8582
Country Japan
 
Platforms (1)
GPL13534 Illumina HumanMethylation450 BeadChip (HumanMethylation450_15017482)
Samples (92)
GSM3045317 genomic DNA_N_909
GSM3045318 genomic DNA_N_912
GSM3045319 genomic DNA_N_913
Relations
BioProject PRJNA438600

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111933_Matrix_Avg_Beta.txt.gz 184.8 Mb (ftp)(http) TXT
GSE111933_RAW.tar 920.4 Mb (http)(custom) TAR (of IDAT)
Raw data provided as supplementary file
Processed data are available on Series record

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