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| Status |
Public on Apr 20, 2018 |
| Title |
Transcriptomic profiling of the Cryptococcus neoformans transition to titan-like cells |
| Organism |
Cryptococcus neoformans H99 |
| Experiment type |
Expression profiling by high throughput sequencing
|
| Summary |
We compared the expression profile of titan-like cells with cells of regular size in C. neoformans. This was investigated at different time points of the transition: 7 and 24 h
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| |
|
| Overall design |
A total number of 10 RNA samples from Cryptococcus neoformans are analyzed. Six of them correspond to control growth conditions (three biological replicates taken after 7 hours and three after 24 h of growth). Four of them correspond to titan-like cells promoting growth conditons (two taken after 7 h and two taken after 24 h of growth).
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| |
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| Contributor(s) |
Ariño J, Oscar Z |
| Citation(s) |
29775477 |
| |
| Submission date |
Mar 05, 2018 |
| Last update date |
Jul 20, 2018 |
| Contact name |
JOAQUIN ARINO |
| E-mail(s) |
joaquin.arino@uab.es
|
| Organization name |
UNIVERSITAT AUTONOMA BARCELONA
|
| Department |
Biochemistry & Mol. Biol.
|
| Lab |
Yeast Molecular Biology
|
| Street address |
ED. IBB
|
| City |
CERDANYOLA DEL VALLES |
| State/province |
Barcelona |
| ZIP/Postal code |
08193 |
| Country |
Spain |
| |
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| Platforms (1) |
| GPL24689 |
Illumina NextSeq 500 (Cryptococcus neoformans var. grubii H99) |
|
| Samples (10)
|
| GSM3030104 |
Cells grown in standard medium for 7 h, replicate 1 |
| GSM3030105 |
Cells grown in standard medium for 7 h, replicate 2 |
| GSM3030106 |
Cells grown in standard medium for 7 h, replicate 3 |
| GSM3030107 |
Cells grown in Titan-like promoting medium for 7 h, replicate 1 |
| GSM3030108 |
Cells grown in Titan-like promoting medium for 7 h, replicate 2 |
| GSM3030109 |
Cells grown in standard medium for 24 h, replicate 1 |
| GSM3030110 |
Cells grown in standard medium for 24 h, replicate 2 |
| GSM3030111 |
Cells grown in standard medium for 24 h, replicate 3 |
| GSM3030112 |
Cells grown in Titan-like promoting medium for 24 h, replicate 1 |
| GSM3030113 |
Cells grown in Titan-like promoting medium for 24 h, replicate 2 |
|
| Relations |
| BioProject |
PRJNA436917 |
| SRA |
SRP133926 |
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