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Series GSE111229 Query DataSets for GSE111229
Status Public on Nov 23, 2018
Title Single cell RNA-sequencing of EpCAM-, CD45-, CD31- NG2- murine mammary tumor fibroblasts
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study was conducted to determine heterogeneity of cancer-associated fibroblasts (CAFs) in mammary tumors, by unsupervised analysis of single cell transcriptomes.
 
Overall design 768 single EpCAM-, CD45-, CD31- NG2- fibroblasts were isolated from mammary tumors of two 14 week old MMTV-PyMT mice. The cells were sequenced following the Smart-Seq2 protocol (Picelli et al. Nature Methods 2013).
 
Contributor(s) Pietras K, Bartoschek M
Citation(s) 30514914
Submission date Feb 28, 2018
Last update date Mar 19, 2019
Contact name Kristian Pietras
E-mail kristian.pietras@med.lu.se
Phone 00462226429
Organization name Lund University
Department Laboratory Medicine
Lab Experimental Oncology
Street address Medicon Village, Building 404:A3
City Lund
ZIP/Postal code 22381
Country Sweden
 
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (768)
GSM3025845 SS2_15_0048_A1
GSM3025846 SS2_15_0048_A2
GSM3025847 SS2_15_0048_A3
Relations
BioProject PRJNA436229
SRA SRP133642

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111229_Mammary_Tumor_fibroblasts_768samples_rawCounts.txt.gz 5.3 Mb (ftp)(http) TXT
GSE111229_Mammary_Tumor_fibroblasts_768samples_rpkmNormalized.txt.gz 23.8 Mb (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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