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Series GSE111229 Query DataSets for GSE111229
Status Public on Nov 23, 2018
Title Single cell RNA-sequencing of EpCAM-, CD45-, CD31- NG2- murine mammary tumor fibroblasts
Organism Mus musculus
Experiment type Expression profiling by high throughput sequencing
Summary This study was conducted to determine heterogeneity of cancer-associated fibroblasts (CAFs) in mammary tumors, by unsupervised analysis of single cell transcriptomes.
Overall design 768 single EpCAM-, CD45-, CD31- NG2- fibroblasts were isolated from mammary tumors of two 14 week old MMTV-PyMT mice. The cells were sequenced following the Smart-Seq2 protocol (Picelli et al. Nature Methods 2013).
Contributor(s) Pietras K, Bartoschek M
Citation(s) 30514914
Submission date Feb 28, 2018
Last update date Mar 19, 2019
Contact name Kristian Pietras
Phone 00462226429
Organization name Lund University
Department Laboratory Medicine
Lab Experimental Oncology
Street address Medicon Village, Building 404:A3
City Lund
ZIP/Postal code 22381
Country Sweden
Platforms (1)
GPL13112 Illumina HiSeq 2000 (Mus musculus)
Samples (768)
GSM3025845 SS2_15_0048_A1
GSM3025846 SS2_15_0048_A2
GSM3025847 SS2_15_0048_A3
BioProject PRJNA436229
SRA SRP133642

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE111229_Mammary_Tumor_fibroblasts_768samples_rawCounts.txt.gz 5.3 Mb (ftp)(http) TXT
GSE111229_Mammary_Tumor_fibroblasts_768samples_rpkmNormalized.txt.gz 23.8 Mb (ftp)(http) TXT
Raw data are available in SRA
Processed data are available on Series record

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