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Series GSE110473 Query DataSets for GSE110473
Status Public on Jul 18, 2018
Title RNAs Interact with BRD4 to Promote Enhanced Chromatin Engagement and Transcription Activation
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary In this study, we provide a previously unrecognized convergence between eRNAs and histone acetylation in regulating the chromatin interactions and transcription functions of BRD4.
 
Overall design Examination of BRD4 binding prior to and following 16 hr TNF signaling in SW480 colon cancer cells.
 
Contributor(s) Rahnamoun H, Lee J, Sun Z, Lu H, Ramsey KM, Komives EA, Lauberth SM
Citation(s) 30076409
Submission date Feb 12, 2018
Last update date Mar 21, 2019
Contact name Shannon M Lauberth
E-mail(s) slauberth@ucsd.edu
Organization name UCSD
Department Biological Sciences
Lab Lauberth Lab
Street address 9500 Gilman Drive #0322, Bonner Hall 3202
City San Diego
State/province California
ZIP/Postal code 92093
Country USA
 
Platforms (1)
GPL20301 Illumina HiSeq 4000 (Homo sapiens)
Samples (2)
GSM2991898 0 hr TNF-a BRD4 ChIP-seq
GSM2991899 16 hr TNF-a BRD4 ChIP-seq
Relations
BioProject PRJNA433832
SRA SRP132692

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE110473_RAW.tar 221.9 Mb (http)(custom) TAR (of BIGWIG)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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