|
| Status |
Public on Apr 02, 2009 |
| Title |
Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection |
| Organism |
Oryza sativa |
| Experiment type |
Expression profiling by array
|
| Summary |
During the pathogenesis of virus disease, lots of changes occur in plant hosts including the altered gene expression profiles. Rice stripe virus (RSV) is the type member of Tenuivirus, transmitted by Laodelphax striatellus in a circulative propagative man
To investigate the molecular differences in two japonica rice genotypes WuYun3 and KT95-418 in response to RSV infection, Affymetrix rice genome array were used to analyze and compare their transcriptional profiles.
Keywords: disease state analysis
|
| |
|
| Overall design |
Nine-day old 20 rice seedlings were exposed to approximately 100 viruliferous small brown planthoppers (Laodelphax striatellus Fall) for two days to be innoculated by RSV. Then they were transplanted in insect-free greenhouse at 25±3C with a daily photope
|
| |
|
| Contributor(s) |
Zhang X, Wu Z, Xie L, Lin Q, Xie L |
| Citation missing |
Has this study been published? Please login to update or notify GEO. |
| |
| Submission date |
Apr 02, 2008 |
| Last update date |
Dec 27, 2017 |
| Contact name |
Xiaoting Zhang |
| E-mail(s) |
zhangxiaoting921@163.com
|
| Phone |
86-591-83769714
|
| Organization name |
Fujian Agriculture and Forestry University
|
| Department |
Plant Protection Department
|
| Lab |
Plant Virology Institute
|
| Street address |
Jinshan
|
| City |
Fuzhou |
| State/province |
Fujian |
| ZIP/Postal code |
350002 |
| Country |
China |
| |
|
| Platforms (1) |
| GPL2025 |
[Rice] Affymetrix Rice Genome Array |
|
| Samples (12)
|
| GSM278844 |
WuYun3-RSV infected, biological rep1 |
| GSM278845 |
WuYun3-RSV infected, biological rep2 |
| GSM278846 |
WuYun3-RSV infected, biological rep3 |
| GSM278847 |
WuYun3-non-infected, biological rep1 |
| GSM278848 |
WuYun3-non-infected, biological rep2 |
| GSM278849 |
WuYun3-non-infected, biological rep3 |
| GSM278850 |
KT95-418-RSV infected, biological rep1 |
| GSM278851 |
KT95-418-RSV infected,biological rep2 |
| GSM278852 |
KT95-418-RSV infected, biological rep3 |
| GSM278853 |
KT95-418-non-infected, biological rep1 |
| GSM278854 |
KT95-418-non-infected, biological rep2 |
| GSM278855 |
KT95-418-non-infected, biological rep3 |
|
| Relations |
| BioProject |
PRJNA107123 |
Less...
More...