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Series GSE11025 Query DataSets for GSE11025
Status Public on Apr 02, 2009
Title Comparative transcriptional profiling of two contrasting rice genotypes in response to rice stripe virus infection
Organism Oryza sativa
Experiment type Expression profiling by array
Summary During the pathogenesis of virus disease, lots of changes occur in plant hosts including the altered gene expression profiles. Rice stripe virus (RSV) is the type member of Tenuivirus, transmitted by Laodelphax striatellus in a circulative propagative man
To investigate the molecular differences in two japonica rice genotypes WuYun3 and KT95-418 in response to RSV infection, Affymetrix rice genome array were used to analyze and compare their transcriptional profiles.
Keywords: disease state analysis
Overall design Nine-day old 20 rice seedlings were exposed to approximately 100 viruliferous small brown planthoppers (Laodelphax striatellus Fall) for two days to be innoculated by RSV. Then they were transplanted in insect-free greenhouse at 25±3C with a daily photope
Contributor(s) Zhang X, Wu Z, Xie L, Lin Q, Xie L
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Submission date Apr 02, 2008
Last update date Dec 27, 2017
Contact name Xiaoting Zhang
Phone 86-591-83769714
Organization name Fujian Agriculture and Forestry University
Department Plant Protection Department
Lab Plant Virology Institute
Street address Jinshan
City Fuzhou
State/province Fujian
ZIP/Postal code 350002
Country China
Platforms (1)
GPL2025 [Rice] Affymetrix Rice Genome Array
Samples (12)
GSM278844 WuYun3-RSV infected, biological rep1
GSM278845 WuYun3-RSV infected, biological rep2
GSM278846 WuYun3-RSV infected, biological rep3
BioProject PRJNA107123

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE11025_RAW.tar 50.5 Mb (http)(custom) TAR (of CEL)
Raw data provided as supplementary file
Processed data included within Sample table

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