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Series GSE109450 Query DataSets for GSE109450
Status Public on Jan 19, 2018
Title Functionally distinct disease-associated fibroblast subsets in rheumatoid arthritis
Organism Homo sapiens
Experiment type Expression profiling by array
Expression profiling by high throughput sequencing
Summary This SuperSeries is composed of the SubSeries listed below.
 
Overall design Refer to individual Series
 
Citation(s) 29476097
NIH grant(s)
Grant ID Grant title Affiliation Name
F31 AR070582 Transcriptomics in synoviocytes defines pathogenesis of rheumatoid arthritis HARVARD UNIVERSITY (MEDICAL SCHOOL) Kamil Slowikowski
R01 AR063759 Discovery and Functional Impact of Common and Rare Variants in RA BRIGHAM AND WOMEN'S HOSPITAL Soumya Raychaudhuri
U01 GM092691 Genetic predictors of response to anti-TNF therapy in rheumatoid arthritis BRIGHAM AND WOMEN'S HOSPITAL Soumya Raychaudhuri
U01 HG009379 Functionally specialized components of disease heritability in ENCODE data HARVARD SCHOOL OF PUBLIC HEALTH Soumya Raychaudhuri
Submission date Jan 19, 2018
Last update date Mar 15, 2019
Contact name Kamil Slowikowski
Organization name Harvard University
Lab Soumya Raychaudhuri
Street address 77 Avenue Louis Pasteur, Suite 255
City Boston
State/province Massachusetts
ZIP/Postal code 02115
Country USA
 
Platforms (2)
GPL16686 [HuGene-2_0-st] Affymetrix Human Gene 2.0 ST Array [transcript (gene) version]
GPL18573 Illumina NextSeq 500 (Homo sapiens)
Samples (445)
GSM2861345 CD34L_CD90L_Cad11H fibroblasts gated by flow cytometry from donor OA1
GSM2861346 CD34L_CD90H_Cad11H fibroblasts gated by flow cytometry from donor OA1
GSM2861347 CD34L_CD90L_Cad11L fibroblasts gated by flow cytometry from donor OA1
This SuperSeries is composed of the following SubSeries:
GSE107105 Microarray analysis of freshly isolated synovial fibroblast subsets in patients with rheumatoid arthritis or osteoarthritis
GSE109448 RNA-seq analysis of freshly isolated synovial fibroblast subsets from patients with rheumatoid arthritis
GSE109449 Single cell RNA-seq analysis of freshly isolated synovial fibroblasts in patients with rheumatoid arthritis or osteoarthritis
Relations
BioProject PRJNA430903

Download family Format
SOFT formatted family file(s) SOFTHelp
MINiML formatted family file(s) MINiMLHelp
Series Matrix File(s) TXTHelp

Supplementary file Size Download File type/resource
GSE109450_RAW.tar 282.1 Mb (http)(custom) TAR (of CEL)

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