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Series GSE109172 Query DataSets for GSE109172
Status Public on Aug 08, 2019
Title Genome-wide analysis on the human iPS-derived cells during chondrocyte differentiation by the 2C method
Organism Homo sapiens
Experiment type Genome binding/occupancy profiling by high throughput sequencing
Summary We performed open chromatin analysis and genome-wide analysis for RAR-DNA association, on the hiPSC-derived cells in the 2C protocol. The purposes were to analyze sequential opening and closing of chromatin elements, and to elucidate the molecular roles of RAR, in each differentiation stage of the 2C protocol.
Overall design Human iPS-derived cells at day 0, 2, 3, 4, 5, 7 and 9 in the 2C method were analyzed in duplicate.
Contributor(s) Kawata M
Citation(s) 31402337
Submission date Jan 13, 2018
Last update date Sep 23, 2019
Contact name Manabu Kawata
Organization name The University of Tokyo
Street address 7-3-1 Hongo
City Bunkyo-ku
State/province Tokyo
ZIP/Postal code 113-0033
Country Japan
Platforms (1)
GPL20795 HiSeq X Ten (Homo sapiens)
Samples (35)
GSM2934662 ATAC Day 0-1
GSM2934663 ATAC Day 0-2
GSM2934664 ATAC Day 2-1
BioProject PRJNA429919
SRA SRP130962

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Supplementary file Size Download File type/resource
GSE109172_RAW.tar 9.7 Mb (http)(custom) TAR (of BED)
SRA Run SelectorHelp
Raw data are available in SRA
Processed data provided as supplementary file

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